Armita Nourmohammad
@thearmita.bsky.social
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physicist, interested in biology --- Assoc. Prof. of physics @UW (Seattle)
excited to announce that this January we are relocating to Yale to start a theory initiative at the Center for Systems and Engineering Immunology (CSEI):
@yalecsei.bsky.social
looking to hire 2 postdocs to join us in this endeavor. more details can be found here:
sites.google.com/uw.edu/statp...
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SPE - join us
Postdoctoral position: In January 2026, we are relocating to Yale university to start a theory initiative at the Center for Systems and Engineering Immunology (CSEI). We are looking for talented postd...
https://sites.google.com/uw.edu/statphysevol/join-us?authuser=0
about 1 month ago
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reposted by
Armita Nourmohammad
Frederick "Erick" Matsen
about 1 month ago
The Mahan postdoctoral fellowship offers 21 months of support to develop your own research with Fred Hutch computational biology faculty-- lots of excellent labs to choose from! Apply:
apply.interfolio.com/172697
Faculty:
www.fredhutch.org/en/research...
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Herbold Computational Biology Faculty & Labs
https://www.fredhutch.org/en/research/divisions/public-health-sciences-division/research/computational-biology/faculty-labs.html
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excited that this paper is finally out in
@pnas.org
:
www.pnas.org/doi/10.1073/...
Led by Gian Marco Visani (effort initiated by Michael Pun), fantastic collaboration with
@pgtimmune.bsky.social
@asya-minervina.bsky.social
and Phil Bradley.
add a skeleton here at some point
about 2 months ago
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check out our manuscript (led by Obinna Ukogu) on Design principles of cytotoxic T-cell response:
www.biorxiv.org/content/10.1...
about 2 months ago
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reposted by
Armita Nourmohammad
Gabriel Victora
6 months ago
Wanted to highlight our latest preprint--a huge effort by multiple people and labs, but led primarily by
@wsdewitt.github.io
, Tatsuya Araki, and Ashni Vora, in a very close wet-dry collaboration with
@matsen.bsky.social
’s lab at the Hutch
www.biorxiv.org/content/10.1...
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Replaying germinal center evolution on a quantified affinity landscape
Darwinian evolution of immunoglobulin genes within germinal centers (GC) underlies the progressive increase in antibody affinity following antigen exposure. Whereas the mechanics of how competition be...
https://www.biorxiv.org/content/10.1101/2025.06.02.656870v1
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reposted by
Armita Nourmohammad
William DeWitt
6 months ago
Recasting the perils of phylodynamic non-identifiability as a feature not a bug, we show that a unique forward-equivalent process enables exact and efficient simulation from arbitrarily large populations. With M Celentano, S Prillo,
@yun-s-song.bsky.social
www.pnas.org/doi/10.1073/pnas.2412978122
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check out our new manuscript (led by Gian Marco Visani): structure-based machine learning model for TCR-pMHC complexes, predicting T-cell affinity to peptide-MHC complexes, quantifying T-cell receptor specificity, and designing de-novo immunogenic peptides:
arxiv.org/abs/2503.00648
9 months ago
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