Ben Berman
@benbfly.bsky.social
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📥 186
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Principal Bioinformatician, VolitionRx Associate Professor, Hebrew University of Jerusalem
There are few perfect things in life. the
@vscode.dev
differ is one of them.
10 months ago
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Our latest Nanopore 🧬 liquid biopsy paper! The first long-read survey of circulating DNA in a diverse set of cancer types. We discovered 3 distinct fragmentomic subtypes, including a new hypofragmented class with fragments longer than those captured by Illumina. 👇
www.biorxiv.org/content/10.1...
over 1 year ago
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Excited about this important new study to investigate use of circulating chromatin /DNA as a biomarker for sepsis in the critical care environment. This is a new world of opportunity to save lives.
www.guysandstthomas.nhs.uk/news/revolut...
almost 2 years ago
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this looks like a major advancement for ChIP-seq! Query up to hundreds of antibodies in a single experiment. From Mitchell Guttman and colleagues.
add a skeleton here at some point
almost 2 years ago
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CNS tumor classification during surgery using rapid Oxford Nanopore sequencing. This technology is so promising for real-time, near-patient genomic analysis, not least because of direct DNA methylation detection. Very exciting paper - congrats!
www.nature.com/articles/s41...
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Ultra-fast deep-learned CNS tumour classification during surgery - Nature
Sturgeon is a pretrained neural network that uses incremental results from nanopore sequencing to rapidly classify central nervous system tumours and can be used to aid critical decision-making during...
https://www.nature.com/articles/s41586-023-06615-2
almost 2 years ago
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reposted by
Ben Berman
Oded Rechavi
almost 2 years ago
Yesterday evening I found out my friend got murdered in his house together with his wife and all his kids. He was a very good man who helped anybody as a principle, even if you weren't close with whatever you might need. A real Kibbutznik. I am broken. Everybody around me getting similar news.
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I doubt Elon will notice the entire biosciences crowd leaving. But who is the
@odedrechavi.bsky.social
of the Machine Learning and Aerospace academic communities? He will notice when they leave.
add a skeleton here at some point
about 2 years ago
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