Ben Berman
@benbfly.bsky.social
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📥 191
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Principal Bioinformatician, VolitionRx Associate Professor, Hebrew University of Jerusalem
reposted by
Ben Berman
22 days ago
16000 tokens per second on a decent model. This type of speed is the future. Opens up an entirely new class of user experiences
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From the LocalLLaMA community on Reddit: Free ASIC Llama 3.1 8B inference at 16,000 tok/s - no, not a joke
Explore this post and more from the LocalLLaMA community
https://www.reddit.com/r/LocalLLaMA/comments/1r9e27i/free_asic_llama_31_8b_inference_at_16000_toks_no/?utm_source=share&utm_medium=mweb3x&utm_name=mweb3xcss&utm_term=1&utm_content=share_button
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reposted by
Ben Berman
Lior Pachter
22 days ago
I used Claude Opus 4.5/4.6 (and a bit of Codex GPT-5.3) to port edgeR to Python. See edgePython
github.com/pachterlab/e...
This allowed me to develop a single-cell DE method that extends NEBULA with edgeR Empirical Bayes. All in one week. Details in
doi.org/10.64898/202...
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There are few perfect things in life. the
@vscode.dev
differ is one of them.
over 1 year ago
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Our latest Nanopore 🧬 liquid biopsy paper! The first long-read survey of circulating DNA in a diverse set of cancer types. We discovered 3 distinct fragmentomic subtypes, including a new hypofragmented class with fragments longer than those captured by Illumina. 👇
www.biorxiv.org/content/10.1...
almost 2 years ago
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Excited about this important new study to investigate use of circulating chromatin /DNA as a biomarker for sepsis in the critical care environment. This is a new world of opportunity to save lives.
www.guysandstthomas.nhs.uk/news/revolut...
about 2 years ago
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this looks like a major advancement for ChIP-seq! Query up to hundreds of antibodies in a single experiment. From Mitchell Guttman and colleagues.
add a skeleton here at some point
about 2 years ago
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CNS tumor classification during surgery using rapid Oxford Nanopore sequencing. This technology is so promising for real-time, near-patient genomic analysis, not least because of direct DNA methylation detection. Very exciting paper - congrats!
www.nature.com/articles/s41...
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Ultra-fast deep-learned CNS tumour classification during surgery - Nature
Sturgeon is a pretrained neural network that uses incremental results from nanopore sequencing to rapidly classify central nervous system tumours and can be used to aid critical decision-making during...
https://www.nature.com/articles/s41586-023-06615-2
over 2 years ago
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reposted by
Ben Berman
Oded Rechavi
over 2 years ago
Yesterday evening I found out my friend got murdered in his house together with his wife and all his kids. He was a very good man who helped anybody as a principle, even if you weren't close with whatever you might need. A real Kibbutznik. I am broken. Everybody around me getting similar news.
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I doubt Elon will notice the entire biosciences crowd leaving. But who is the
@odedrechavi.bsky.social
of the Machine Learning and Aerospace academic communities? He will notice when they leave.
add a skeleton here at some point
over 2 years ago
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you reached the end!!
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