Mathi Thiruppathy
@mathithiru.bsky.social
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add a skeleton here at some point
26 days ago
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Mathi Thiruppathy
Evgeny Kvon
3 months ago
Our paper describing the Range Extender element which is required and sufficient for long-range enhancer activation at the Shh locus is now available at
@nature.com
. Congrats to
@gracebower.bsky.social
who led the study. Below is a brief summary of the main findings
www.nature.com/articles/s41...
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Range extender mediates long-distance enhancer activity - Nature
The REX element is associated with long-range enhancer–promoter interactions.
https://www.nature.com/articles/s41586-025-09221-6
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Evgeny Kvon
3 months ago
How do non-coding variants in enhancers lead to disease? Happy to share our recent work, led by
@ewholling.bsky.social
, in which we discovered that poised chromatin sensitizes enhancers to aberrant activation by non-coding mutations, contributing to disease.
www.biorxiv.org/content/10.1...
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😍 So much fascinating development in this system. These images and movies do justice to how beautiful and complex fish gills are.
add a skeleton here at some point
4 months ago
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Mathi Thiruppathy
Mathieu Preußner
5 months ago
-A Gill's Secret Sidekick - A small, often-overlooked organ tucked behind the eye. In zebrafish, the pseudobranch arises from mandibular arch mesenchyme — the same region that forms jaws — and shares gene expression and developmental programs with true gills. 🔬
#FluorescenceFriday
#zebrafish
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Mathi Thiruppathy
Mathieu Preußner
6 months ago
Gills just wanna have
#FluorescenceFriday
🎵 Phalloidin reveals the beauty of the filament's distal tip in cleared gills of adult 🦓🐟
#microscopy
#devbio
#sciart
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Gorgeous gills. 😍
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7 months ago
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Really appreciated this opportunity from
@the-node.bsky.social
to write about the amazing journey I got to be on for 6 years and the people I met on the way. Every day I feel fortunate to live in and work for a society that chooses to be curious. Now more than ever I hope it continues to do so. ✨
add a skeleton here at some point
7 months ago
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Mathi Thiruppathy
Rita Strack
8 months ago
"Imagine a DAPI-like stain, but for the extracellular matrix." That's basically how this work was pitched to me by Kayvon and Antonio a year or so ago. Now the final product really delivers. Read about their versatile label for ECM in living tissues here:
www.nature.com/articles/s41...
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Development
8 months ago
Sox10 is required for systemic initiation of bone mineralization Read this
#OpenAccess
Research Article by Stefani Gjorcheska, Lindsey Barske & co.
@cincyresearch.bsky.social
:
https://journals.biologists.com/dev/article/152/2/dev204357/365396/Sox10-is-required-for-systemic-initiation-of-bone
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Nadav Ahituv
9 months ago
Massively parallel reporter assays (MPRAs) testing >680,000 sequences combined with machine learning to improve regulatory element & variant effect prediction. Amazing work by
@vagar.bsky.social
, Fumitaka Inoue,
@jshendure.bsky.social
and many others as part of ENCODE.
www.nature.com/articles/s41...
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Massively parallel characterization of transcriptional regulatory elements - Nature
Lentivirus-based reporter assays for 680,000 regulatory sequences from three cell lines coupled to machine-learning models lead to insights into the grammar of cis-regulatory elements.
https://www.nature.com/articles/s41586-024-08430-9
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Excited to share this story from my PhD revealing the surprising legacy of our gill-bearing ancestry in the form of our cartilaginous outer ears, summarized in this series of Tweets.
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9 months ago
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