@davidasivak.bsky.social
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Professor & Canada Research Chair @SFUPhysics Nonequilibrium statistical biophysics
Is it more efficient to push a molecular motor with a constant force, or at a constant velocity? See our collaborative paper in
@physrevlett.bsky.social
doi.org/10.1103/b24h...
and the Focus article
physics.aps.org/articles/v18...
to learn the winner and the why (it’s all about the fluctuations).
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Efficiently Driving ${\mathrm{F}}_{1}$ Molecular Motor in Experiment by Suppressing Nonequilibrium Variation
Turning a biologically important molecular motor at a constant rate saves energy, according to experiments.
https://doi.org/10.1103/b24h-v7by
about 1 month ago
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reposted by
FQxI
about 2 months ago
Johann du Buisson, Jannik Ehrich,
mleighton.bsky.social
,
davidasivak.bsky.social
, and John Bechhoefer introduce a one-coordinate test that infers heat flow to flag “demonic” operation. In kinesin simulations tuned to experiments, the motor grows more demon-like as active fluctuations rise.
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Still accepting postdoc applications!
add a skeleton here at some point
5 months ago
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reposted by
5 months ago
New preprint out today: “Information Thermodynamics of Cellular Ion Pumps”. Led by talented undergraduate student Julián Jiménez-Paz, and working with
@davidasivak.bsky.social
, we explore the thermodynamics of cellular ion pumps like the sodium-potassium pump.
arxiv.org/abs/2506.11248
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Fun new paper by Callum
@sfuphysics.bsky.social
, on energetically efficient multi-parameter driving of our favorite molecular motor (shout out F1!).
doi.org/10.1103/bm3d...
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Multiparameter optimal control of ${\mathrm{F}}_{1}$-ATPase
Biological molecular machines convert free energy between different forms in cells, often at high efficiency. Optimal control theory provides a framework to elucidate design principles governing energ...
https://doi.org/10.1103/bm3d-c67v
5 months ago
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Congratulations to Matt on his Convocation Medal!
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5 months ago
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Canada Excellence Research Chairs offer $4-8M over eight years to build a world-class research focus.
5 months ago
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Postdoc opportunity! Join us in heavenly Vancouver (Canada) to develop fundamental nonequilibrium stat mech, thermo, and info theory applied to biomolecular machines and in close collaboration with experiment. Details:
www.sfu.ca/physics/siva...
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Postdoc Ad
https://www.sfu.ca/physics/sivakgroup/postdocad.html
5 months ago
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Kudos to Matt for his complete leadership from start to finish on this review, which was invited as a result of his compelling, cohesive, and ground-breaking graduate research!
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6 months ago
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Check out the CUNY-ITS/Princeton-CPBF symposium tomorrow on Information and Irreversibility
itsatcuny.org/calendar/202...
featuring
@fakhrilab.bsky.social
, my colleague John Bechhoefer, and yours truly!
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Information and Irreversibility — Initiative for the Theoretical Sciences
Friday, 18 April, 2025 10:30 AM - 5:30 PM Skylight room
https://itsatcuny.org/calendar/2025/4/18/information-and-irreversibility
7 months ago
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I have openings for graduate students in
@sfuphysics.bsky.social
, Chemistry, or MBB. Check out
davidsivak.com
for our research interests!
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7 months ago
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The sixth annual Workshop on Stochastic Thermodynamics (WOST VI) will be held May 12-16, 2025. This workshop is entirely online and free to attend. 10-minute lightning talks will be chosen from 1-page abstracts, with priority given to early-career researchers.
10 months ago
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