Mario dos Reis
@mariodosreis.bsky.social
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📥 239
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Reader in Statistical Phylogenetics @QMUL
https://dosreislab.github.io/
🇻🇪🇵🇹🇬🇧
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Frustrated that MCMCtree does not have complex substitution models? The IQ-tree team has now developed IQ2MC, an interface for seamless integration of IQ-tree's substitution models with MCMCtree's fast Bayesian pipeline for clock dating. Read the preprint here:
ecoevorxiv.org/repository/v...
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IQ2MC: A New Framework to Infer Phylogenetic Time Trees Using IQ-TREE 3 and MCMCTree with Mixture Models
https://ecoevorxiv.org/repository/view/9125/
5 months ago
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Frustrated that MCMCtree does not have complex substitution models? The IQ-tree team has now developed IQ2MC, an interface for seamless integration of IQ-tree's substitution models with MCMCtree's fast Bayesian pipeline for clock dating. Read the preprint here:
ecoevorxiv.org/repository/v...
loading . . .
IQ2MC: A New Framework to Infer Phylogenetic Time Trees Using IQ-TREE 3 and MCMCTree with Mixture Models
https://ecoevorxiv.org/repository/view/9125/
5 months ago
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A reminder that we have two open PhD projects on Bayesian phylogenetics in the lab: One with the new TREE Doctoral Landscape Awards:
www.trees-dla.ac.uk/projects/int...
(deadline 20th Jan) And another with CSC:
www.findaphd.com/phds/project...
(deadline 29th Jan)
9 months ago
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reposted by
Mario dos Reis
Laura Mulvey
10 months ago
So excited to see this paper finally published! 🥳 This was the main focus of my PhD and demonstrates the application of model adequacy for models of morphological evolution. 1/n
academic.oup.com/sysbio/advan...
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Assessing the Adequacy of Morphological Models Using Posterior Predictive Simulations
Abstract. Reconstructing the evolutionary history of different groups of organisms provides insight into how life originated and diversified on Earth. Phyl
https://academic.oup.com/sysbio/advance-article-abstract/doi/10.1093/sysbio/syae055/7814882?redirectedFrom=fulltext
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Over 120 PhD projects have now been released as part of the new London Doctoral Landscape Awards, for start in Oct 2025.
www.trees-dla.ac.uk/projects
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Projects | UCL Trees
https://www.trees-dla.ac.uk/projects
10 months ago
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reposted by
Mario dos Reis
Randall Munroe
11 months ago
Geometriphylogenetics
xkcd.com/3010
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Our paper on Bayesian selection of relaxed clock models is out in Systematic Biology! This is the work of our PhD student Muthukumaran Panchaksaram, in collaboration with Lucas Freitas from Brazil.
doi.org/10.1093/sysb...
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Bayesian Selection of Relaxed-clock Models: Distinguishing Between Independent and Autocorrelated Rates
Abstract. In Bayesian molecular-clock dating of species divergences, rate models are used to construct the prior on the molecular evolutionary rates for br
https://doi.org/10.1093/sysbio/syae066
11 months ago
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The new TREES London PhD training programming in the Environmental Sciences is now up!
www.trees-dla.ac.uk
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TREES | Training, Research & Equity in Environmental Sciences
https://www.trees-dla.ac.uk/
11 months ago
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PhD position available in our lab:
www.findaphd.com/phds/project...
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Developing efficient Bayesian samplers for evolutionary analysis in the Tree of Life at Queen Mary University of London on FindAPhD.com
PhD Project - Developing efficient Bayesian samplers for evolutionary analysis in the Tree of Life at Queen Mary University of London, listed on FindAPhD.com
https://www.findaphd.com/phds/project/developing-efficient-bayesian-samplers-for-evolutionary-analysis-in-the-tree-of-life/?p176899
11 months ago
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