Thanina
@thancbn.bsky.social
📤 22
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PhD student in computational biology by day, artist by night • 25 • ENG/FR ok :)
reposted by
Thanina
Cologne Graduate School of Ageing Research
about 2 months ago
Apply now for a fully funded
#PhD
position at the Cologne Graduate School of Ageing Research and become part of our vibrant
#AgingResearch
commmuny. 🗓️ Deadline: November 3, 2025. ℹ️ More info: www.ageing-grad-school.de 📣 Spread the news!
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i drew the people from my lab (
@compbiogroup.bsky.social
) in front of our new building a few months ago :)
4 months ago
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reposted by
Thanina
Computational Biology Group
4 months ago
As a reminder, our
Omics Ambulance consulting service
, is open on Fridays to members of the University of Cologne. Come talk to us!
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reposted by
Thanina
GrassJelly
4 months ago
Drew this for that fanart contest from IZE press…
#orv
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2.5 days for one (1) ggplot tree is crazy 😟
5 months ago
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reposted by
Thanina
maru
7 months ago
Lantern carrier
#art
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reposted by
Thanina
Computational Biology Group
7 months ago
We have moved to our new home! Our new office is now on the top floor of the
Center for Metabolic Research Building
!🎉
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reposted by
Thanina
Computational Biology Group
7 months ago
Halfpipe
, our tool for analyzing RNA-seq data from metabolic RNA labeling experiments, is out!!!🎉 Congratulations to Jason and the team including collaborators from
@molgen.mpg.de
and
@uniklinik-fr.bsky.social
! The code is available on
GitHub
.
#RNAseq
#SLAMseq
#RNAmetaboliclabeling
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reposted by
Thanina
Hana Ayoob
7 months ago
Today’s
#FebruArty
prompt is ‘divided’ & mitosis feels like an excellent response 🐡
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reposted by
Thanina
Amalas
7 months ago
Yes, if you use generative ai in any creative field, I am actually better than you. There’s no debate
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just read a paper about how melanoma incidence in grey horses is due to a cnv and 😊 hihi bioinformatians helped answer this question i've been asking myself for 15 years ! ! ! it's such a cool job that we do
7 months ago
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reposted by
Thanina
Rob Patro
8 months ago
Big update to our tool alevin-fry-atac, for preprocessing of scATAC-seq data (
www.biorxiv.org/content/10.1...
). The main improvements center around optimizations to mapping speed, reaching almost 3x the speed of chromap at 32 threads. Some opts are general & can be backported to sshash!
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Alevin-fry-atac enables rapid and memory frugal mapping of single-cell ATAC-seq data using virtual colors for accurate genomic pseudoalignment
Ultrafast mapping of short reads via lightweight mapping techniques such as pseudoalignment has significantly accelerated transcriptomic and metagenomic analyses, often with minimal accuracy loss comp...
https://www.biorxiv.org/content/10.1101/2024.11.27.625771v2
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reposted by
Thanina
Computational Biology Group
8 months ago
Only a few days left to apply!
add a skeleton here at some point
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reposted by
Thanina
CECAD Cologne
8 months ago
Happy International Day of Women and Girls in Science from
#CECAD
!🌟👩🔬🔬
#February11
Today, we celebrate the extraordinary contributions of women in driving innovation all over the world & stand proud of our female scientists who are shaping the future of aging research.
#WomenInScience
#WomenInSTEM
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reposted by
Thanina
Computational Biology Group
8 months ago
Congratulations to Justus
@jggil.bsky.social
for the successful defense of his Bachelor thesis! 🎉🎓 His thesis "Multi-modal omics data integration using spectral embeddings" expands our work on algorithms for
#SpatialTranscriptomics
initiated with
SpaCo
.
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reposted by
Thanina
Computational Biology Group
8 months ago
We are
#hiring
! A new head of Medical Statistics is needed in Cologne:
www.linkedin.com/feed/update/...
#uniköln
#unicologne
#medicalstatistics
#jobalert
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Computational Biology Group @IMSB on LinkedIn: Biometriker/in (w/m/d) mit Leitungsfunktion
Job alert!! IMSB (Institute of Medical Statistics and Bioinformatics) is #hiring a new Head of Medical Statistics in Cologne. This position is *permanent* and…
https://www.linkedin.com/feed/update/urn:li:activity:7287755233093390336
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recycler ou ne pas recycler la classe inversée de CpHMD pour le journal club..................................
8 months ago
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reposted by
Thanina
Computational Biology Group
8 months ago
Congratulations Till on publishing this collaborative work between University of Cologne
@cecad.bsky.social
, Goethe University Frankfurt and University Hospital Muenster!
www.sciencedirect.com/science/arti...
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Matrix-mediated activation of murine fibroblast-like synoviocytes
Fibroblast-like synoviocytes (FLS) are key cells promoting cartilage damage and bone loss in rheumatoid arthritis (RA). They are activated to assume a…
https://www.sciencedirect.com/science/article/pii/S0014482725000047?via%3Dihub#sec5
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reposted by
Thanina
Wolfgang Huber
9 months ago
How to do differential expression with scRNAseq data? State of the art is "pseudo-bulk" analysis with RNA-seq methods like edgeR or DESeq2, where "cell type" is encoded as discrete categories. Biologically, discrete categories are not always the most appropriate concept.(1/3)
doi.org/10.1038/s415...
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Analysis of multi-condition single-cell data with latent embedding multivariate regression - Nature Genetics
Latent embedding multivariate regression models multi-condition single-cell RNA-seq using a continuous latent space, enabling data integration, per-cell gene expression prediction and clustering-free ...
https://doi.org/10.1038/s41588-024-01996-0
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maybe i post here abt science or abt art or maybe both !!!!! :) my supervisor wants to make a lab acc anyways
9 months ago
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