Jackson Burns
@fastprop.bsky.social
π€ 466
π₯ 119
π 13
Researcher
reposted by
Jackson Burns
pyOpenSci
about 2 months ago
π Want to publish your own Python package? Join pyOpenSciβs 2-hour online workshop Nov 6: βοΈ Build your first package fast βοΈ Learn the core files (pyproject.toml, docs, metadata) βοΈ Publish to PyPI with confidence π Nov 6, 2025 | Online ποΈ
bit.ly/PythonPackaging
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The emperor has no clothes
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5 months ago
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This is the golden age of science informatics!
add a skeleton here at some point
7 months ago
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reposted by
Jackson Burns
Greg Landrum
8 months ago
The new
#RDKit
blog post is an update of an older tutorial on displaying fingerprint bits.
greglandrum.github.io/rdkit-blog/p...
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RDKit blog - Rendering fingerprint bits
Visualizing the meaning of fingerprint bits
https://greglandrum.github.io/rdkit-blog/posts/2025-03-29-updated-bit-rendering.html
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Just started using Zarr - literally unbelievably good.
add a skeleton here at some point
8 months ago
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reposted by
Jackson Burns
pyOpenSci
8 months ago
Are you interested in getting involved in peer review of software? We need more editors! We are looking for folks with a background in
#physics
and also people with more stats / analytics background. Join our team. support the
#opensource
tools that drive
#science
π’ Apply here:
buff.ly/PKSpJ47
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https://forms.gle/hZpryGTFRya5
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Currently making a slide deck in markdown and I've never felt so powerful
9 months ago
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Cool application of a foundation model to drug design
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9 months ago
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polaris is an amazing tool with a similarly amazing development team! Try it out today if you work in Computer Aided Drug Discovery world
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9 months ago
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reposted by
Jackson Burns
Polaris
9 months ago
π¨ Extension Alert: The intermediate leaderboard submission deadline for the antiviral challenge has been extended to midnight on February 7th! Don't miss this chance to see how you stack up against other participants! Submit your results today:
polarishub.io/competitions
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reposted by
Jackson Burns
Dan Goodman
10 months ago
This is obviously how scientific articles should be, and if we had an open ecosystem designed for users rather than profit, we would have had this years ago. Time to dump commercial publishers and their paywalls.
add a skeleton here at some point
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I highly suggest all my followers working with Python to follow
@pyopensci.org
- great resources for packaging your code for improved reproducibility
10 months ago
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Thank you to everyone who read and cited my papers last year - proud to say that I received 10 citations in 2024! Double digits for the first timeπ
10 months ago
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reposted by
Jackson Burns
Eugene Vinitsky π
10 months ago
It is roughly 10 lines of code to go from 1 GPU to N GPUs with pytorch DDP. Pointing this out so that everyone is aware and doesn't shy away from scaling their code
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reposted by
Jackson Burns
Philip Wheeler
11 months ago
That C-C and C-N coupling are now viewed as boring (comparable to amide bond formation!!) is a testament to the work that Buchwald, Hartwig, and many others have done in the past 20 years.
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An interesting read for all scientists publishing papers
add a skeleton here at some point
11 months ago
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LLMs aren't reasoning, and I tire of seeing articles acting like they are
11 months ago
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reposted by
Jackson Burns
Cas
11 months ago
π’ Calling all ML practitioners! Have you been waiting for an opportunity to prove how well your model performs on a blind, newly generated and consistent test set? You now have the unique opportunity to! Super excited to launch a first competition on
@polarishub.io
!
add a skeleton here at some point
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I want to learn fortran - any recommendations on projects to try, toolchains to use, etc.?
11 months ago
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My machine learning data splitting library astartes has just hit 64 stars on GitHub! β We built this to help rigorously quantify how well our models actually work - if you want to quantify how well you models extrapolates into new feature or target space, give it a look:
github.com/JacksonBurns...
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GitHub - JacksonBurns/astartes: Better Data Splits for Machine Learning
Better Data Splits for Machine Learning. Contribute to JacksonBurns/astartes development by creating an account on GitHub.
https://github.com/JacksonBurns/astartes
12 months ago
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Graduate school is revising a paragraph seven times knowing full well that people will skim it just to get to the figures...
12 months ago
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you reached the end!!
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