@rociorius.bsky.social
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reposted by
Alex Geary
29 days ago
I am super proud to present our new manuscript “Using SpliceAI to triage splice-altering variants in 7,220 individuals with rare conditions highlights limitations of the precomputed scores”
www.medrxiv.org/content/10.1...
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Using SpliceAI to triage splice-altering variants in 7,220 individuals with rare conditions highlights limitations of the precomputed scores
Background: SpliceAI is a deep learning algorithm that predicts whether genetic variants are likely to affect splicing. Precomputed spliceAI predictions for all theoretical SNVs and small indels were ...
https://www.medrxiv.org/content/10.1101/2025.08.27.25334471v1
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reposted by
Nicky Whiffin
about 1 month ago
🚨 New preprint led by amazing duo
@rociorius.bsky.social
and
@alexblakes.bsky.social
in collaboration with
@cassimons.bsky.social
,
@dgmacarthur.bsky.social
and many other amazing folks! ❤️ We describe the clinical phenotype of a recessive NDD associated with biallelic variants in RNU4-2 🧬 See 🧵👇
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Nuevo diagnóstico ligado a
#RNU4-2
🧬: variantes bialélicas causan un
#TND
recesivo con cambios característicos en sustancia blanca en RM 👉 hay que considerar este gen no codificante en la búsqueda/diagnóstico.
tinyurl.com/3j9r56s8
La historia completa la cuenta
@alexblakes.bsky.social
aqui 🧵👇
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about 1 month ago
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reposted by
Zornitza Stark
4 months ago
🤗 Hugely excited to share our work on automating iterative reanalysis in
#raredisease
, preprint out:
www.medrxiv.org/content/10.1...
🤖🧬
github.com/populationge...
A superb collaboration with
@dgmacarthur.bsky.social
@cassimons.bsky.social
@heidirehm.bsky.social
@ksamocha.bsky.social
and many more!
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Scalable automated reanalysis of genomic data in research and clinical rare disease cohorts
Reanalysis of genomic data in rare disease is highly effective in increasing diagnostic yields but remains limited by manual approaches. Automation and optimization for high specificity will be necess...
https://www.medrxiv.org/content/10.1101/2025.05.19.25327921v1
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reposted by
4 months ago
Fantastic to see this work published and the bioinformatic tools and criteria freely available to do the equivalent of 8000 western blots at once to boost diagnostic yield in over half the known rare disease genes, with results in under 3 days when
[email protected]
@mcri.bsky.social
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reposted by
Nicky Whiffin
6 months ago
🚨I could not be more excited to share our new preprint on saturation genome editing of the small nuclear RNA (snRNA) RNU4-2:
www.medrxiv.org/content/10.1...
A super fun collaboration with incredible duo
@gregfindlay.bsky.social
@joachimdejonghe.bsky.social
from
@crick.ac.uk
🧬🖥️🩺 🧵1/12
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Saturation genome editing of RNU4-2 reveals distinct dominant and recessive neurodevelopmental disorders
Recently, de novo variants in an 18 nucleotide region in the centre of RNU4-2 were shown to cause ReNU syndrome, a syndromic neurodevelopmental disorder (NDD) that is predicted to affect tens of thous...
https://www.medrxiv.org/content/10.1101/2025.04.08.25325442v1
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reposted by
Hope Tanudisastro
6 months ago
The TenK10K Phase 1 dataset is out! A mammoth effort to generate and analyze paired WGS + scRNA-seq at scale - already yielding exciting insights, with many more to come.
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