Negative binomial regression and inference using a pre-trained transformer - www.nxn.se/p/negative-b...

Hanseatic League - en.wikipedia.org/wiki/Hanseat...

The immunology of asthma and chronic rhinosinusitis - www.nature.com/articles/s41...

Alien: Earth (2025) - www.themoviedb.org/tv/157239-al...

The Truth Is Out There, Part 3: The Game of Belief - www.filfre.net/2024/10/the-...

THE LOTTERY OF FASCINATIONS - slatestarcodex.com/2013/06/30/t...

How pour-over coffee got good - worksinprogress.co/issue/how-po...

A Visual Guide to Gene Delivery - press.asimov.com/articles/gen...

The Day Novartis Chose Discovery - www.alexkesin.com/p/the-day-no...

What's going on with gene therapies? (Part one) - nehalslearnings.substack.com/p/whats-goin...

The immunology of asthma - www.nature.com/articles/s41...

Animals as chemical factories - worksinprogress.co/issue/animal...

The therapeutic potential of stem cells - royalsocietypublishing.org/doi/10.1098/...

The pharma industry from Paul Janssen to today: why drugs got harder to develop and what we can do about it - atelfo.github.io/2023/12/23/b...

Valentine Svensson Negative binomial regression and inference using a pre-trained transformer https://arxiv.org/abs/2508.04111

Negative binomial regression and inference using a pre-trained transformer - arxiv.org/abs/2508.04111

🎉 scverse conference 2025 Registration & Call for Abstracts NOW OPEN! 🎉 We're excited to announce that registration and the call for abstracts are officially open for the scverse Conference 2025! Details in thread! 🧵 1/3

Overinterpreting underpowered multi-omics experiments - thecodon.substack.com/p/falling-in...

(1) Fitting hierarchical models in genetics, (2) A Stan model that runs faster with 400,000 latent parameters, (3) Super-scalable penalized maximum likelihood inference for biome problems, (4) “In the end, I basically gave up working on biology bec... - statmodeling.stat.columbia.edu/2025/07/31/b...

Using hierarchical modeling to get more stable rankings of gene expression - statmodeling.stat.columbia.edu/2025/07/30/u...

Which Kind of Science Reform - elevanth.org/blog/2025/07...

A bioinformatician, computer scientist, and geneticist lead bioinformatic tool development—which one is better? - academic.oup.com/bioinformati...

A recap of virtual cell releases circa June 2025 - ekernf01.github.io/virtual-cell...

This episode is so crazy. I feel like I barely understand this game suddenly hours in. Please check it out!

Optimizing murine sample sizes for RNA-seq studies revealed from large-scale comparative analysis - www.biorxiv.org/content/10.1...

Sequences and consequences - royalsocietypublishing.org/doi/10.1098/...

H5AD files in GEO - www.nxn.se/p/h5ad-files...

IC50 is a deep rabbit hole - blog.turbine.ai/p/ic50-is-a-...

The elusive virtual cell - srikosuri.substack.com/p/the-elusiv...

The Elite Overproduction Hypothesis - www.noahpinion.blog/p/the-elite-...

Reading Neuromancer for the very first time in 2025 - mbh4h.substack.com/p/neuromance...

The state of research on virtual cell modeling - behindbioml.substack.com/p/the-state-...

Creating therapeutic abundance - blog.jck.bio/p/creating-t...

On Progress Studies - luispedro.substack.com/p/on-progress

The Truth is Out There, Part 2: The Power of Belief - www.filfre.net/2024/09/the-...

A pre-trained t-test transformer - www.nxn.se/p/a-pre-trai...

Slot machine strategy - www.nxn.se/p/slot-machi...

Drug Discovery may be in the Cold War Era - kyunghyuncho.me/drug-discove...

Soviet Anime? - animationobsessive.substack.com/p/soviet-anime

What Are Virtual Cells? - centuryofbio.com/p/virtual-cell

SCVI with variational batch encoding - www.nxn.se/p/scvi-with-...

Atul Butte died yesterday. The world lost a giant. A big bear of a man. With a huge smile. With love for everyone. With energy that could power a room. I loved everything about Atul. I loved how he was always happy. I loved how excited he was about science and helping people.

Figma Slides is a Beautiful Disaster - allenpike.com/2025/figma-s...

The duplication crisis: the other replication crisis - www.worksinprogress.news/p/the-duplic...

Evaluating automatic cell number extraction from single cell papers - www.nxn.se/p/evaluating...

Merging SCVI models - www.nxn.se/p/merging-sc...

Multiplexed perturbation screens facilitate a key prerequisite of "virtual cell" efforts: getting lots of perturbation data with detailed outputs. However, they present unique experimental design obstacles. 🧵

Multiplexed perturbations enable massive scale ... but how big can we go? - ekernf01.github.io/multiplexed_...

Breaking Away from Disney Animation - animationobsessive.substack.com/p/breaking-a...