New in Bambu-Pipe: batch effect correction now integrated into clustering for long-read single-cell & spatial RNA-seq Integrate samples across ONT & PacBio, combine 10x 3'/5' chemistries, and get clusters that reflect biology, not technical artifacts. github.com/GoekeLab/bambu-pipe

The 2nd Singapore RNA Salon is just 2 days away! We'll have talks from Early Career Researchers, snacks for networking and a *shuttle bus* to help transport attendees from NUS & A*STAR to NTU! Make sure to register to secure your spot (and receive the bus details!): form.gov.sg/69c0965ce982...

Applications are open for the Singapore Open Research Awards 2026. The awards recognise researchers for open, transparent, and reusable research with meaningful impact. Nominate someone or apply here libguides.ntu.edu.sg/SGORawards2026

We'll be at the NIRBA RNA Science Conference 2026! 🧬 🗓️ 22–23 Oct 2026 | 📍 Singapore Our lab is part of @NIRBA_sg Cluster 2 — RNA modifications & host immunity. Looking forward to the science and the community! #RNAScience #NIRBA #SaveTheDate

We’ve updated our awesome-nanopore list! The list is a community-curated list of ONT software tools, please feel free to check it out & contribute: github.com/GoekeLab/awesome-nanopore #Nanopore #Bioinformatics #LongReadSequencing

2 weeks until the 2nd Singapore RNA Salon! Abstracts for the talks are below ⬇️ The event is open to everyone, from undergrads to PIs, hope to see you there! Registration: form.gov.sg/69c0965ce982...

AI is changing how science (& genomics!) gets done. 🧬 Check out our new "awesome" repo - a curated list of skills, MCP servers & benchmarks for AI agents in bioinformatics. Open source & open for contributions! github.com/GoekeLab/awe...

AI is changing how science (& genomics!) gets done. 🧬 Check out our new "awesome" repo - a curated list of skills, MCP servers & benchmarks for AI agents in bioinformatics. Open source & open for contributions! github.com/GoekeLab/awe...

🙌 Excited to share Bambu and our findings on the new long-read cDNA kit from Oxford Nanopore Technologies — featured at London Calling 2026. Full story at the RNA 2026 Pre-Meeting Workshop, Montreal! 🇨🇦 @nanoporetech.com @rnasociety.bsky.social #RNA2026 #OxfordNanopore #Bambu

The new long read cDNA kit by @nanoporetech.com is a major upgrade (and improvement!), substantially increasing read length, with a strong impact on transcript discovery and quantification. We @goekelab.bsky.social have tested this in the beta release, more updates soon #nanoporeconf

🧬 Join us for the 2nd Singapore RNA Salon! 📅 June 18th, 4–6 PM📍 NTU 3 talks from ECRs covering mitochondrial dsRNA & inflammation, engineered CasRx RNA editing and long-read single-cell & spatial RNA-seq followed by snacks and networking, all are welcome! ⭐ Link & more info in comments

Great trip to Fukuoka with PacBio! 🚀 Sui Yue is on-site, presenting bambu and representing the lab. Hands-on feedback always welcome — let’s discuss!💡 🔗 GitHub: github.com/GoekeLab/bambu 🔗 GitHub: github.com/GoekeLab/bambu-pipe 📄 Preprint: doi.org/10.1101/2024.12.30.630828

We are thrilled to release Bambu-pipe 🧬 🚀 A Nextflow pipeline built for speed, scalability, and precision — unlocking isoform-level insights from long-read single-cell and spatial RNA-seq data💡 🔗 GitHub: github.com/GoekeLab/bambu-pipe 📄 Preprint: doi.org/10.1101/2024.12.30.630828

🚀 1 Hackathon. 3 days! A ton of fun and brain-storming! Huge thanks to the team! 💻✨ Check out our GitHub page for the tools we developed: 🔗 github.com/GoekeLab And the lab website for the team: 🌐 jglab.org #ScienceSky #Hackathon #OpenSource #ResearchComputing🚀💻