Ran the same literature search through Claude Code and ChatGPT. Found ZERO papers in common despite using identical databases. Both searches were useful in finding what I need, but lack of overlap was ... slightly concerning. The lesson: AI tools are powerful but limited. Use multiple (1/2)

Freiburg Galaxy team recently joined experts in Göttingen for the 1st Open Architecture Workshop to help shape the future technical foundations of the National Research Data Infrastructure (NFDI). The team presented their cloud-oriented architecture and shared critical insights from the (1/3)

📣 Happening this week! Join the HeFDI Data School for Introduction to Galaxy – the open-source platform for FAIR data analysis (in German). Learn how to analyse your data, explore research data management, and see how Galaxy supports reproducible science. dataschool.hefdi.de/module/galax...

🌟Help grow the Galaxy Training Network! The GTN is powered by community experts like you. Whether you want to fix a typo, add a new tool, or write an entire tutorial, we’ve made it easy to get started. Explore our guides and jump into contributing here: training.galaxyproject.org/training-mat...

The ITCR Training Network is collecting community input to help shape future informatics and cancer-research training. Your feedback is incredibly valuable. Take the survey: xiar7j-itn.shinyapps.io/itn_follow_up/ Learn more about ITN’s programs: www.itcrtraining.org

The ITCR Training Network (ITN) www.itcrtraining.org develops training materials for informatics and research. We have a short survey ~3-9 min about your experience & preferences for learning as a researcher. Previous engagement not required! xiar7j-itn.shinyapps.io/itn_follow_up/

Join the newly formed Tool Developers Special Interest Group (SIG) to collaborate on high-quality tool maintenance and standardize best practices across the Galaxy ecosystem. This initiative offers a dedicated space for mentorship, peer review, and community-driven development for developers (1/2)

Earlier this week, we released a paper titled "From data to publication in a browser with BRC-Analytics: Evolutionary dynamics of coding overlaps in measles virus" (https://gxy.io/brc-measles-wp). This walks through the analysis of a public set of measles RNA-seq data, all done FOR FREE.

🚀 Galaxy is workflows! Check out the Intergalactic Workflow Commission (IWC) - a curated library of Galaxy workflows that makes data analysis accessible to everyone. Community curated, ready to use! Learn more: https://iwc.galaxyproject.org Watch: https://youtu.be/cBHSYrpMV8s ##Galaxy (1/2)

📣 Introduction to Galaxy, the Open-Source Platform for FAIR Data Analysis (in German) Are you new to e-science? Do you want to learn ways to analyse your material with digital tools from your browser without any programming skills? Do you want to get an idea of research data management? (1/3)

At the EOSC Symposium 2025, the Polish EOSC Node demonstrated a complete FAIR research workflow powered by Galaxy and PLGrid’s Pulsar integrating data analysis, execution, and provenance tracking through Onedata. The presentation video and full details are available via the EOSC Node - (1/2)

At the EOSC Symposium 2025, a standout example was the BERD@NFDI B-Plan use case, a project demonstrating how the Galaxy Europe platform provides the analytical engine to transform complex, unstructured planning data into FAIR research assets for the entire European research community. (1/2)

Reprocess and refine the single-cell results of MERSCOPE experiments https://galaxyproject.org/news/2025-05-19-vpt/ ##UseGalaxy ##GalaxyProject ##EOSC ##Spatial_transcriptomics ##MERSCOPE

📣 Galaxy Ecology training and collabroation fest As colleagues from CCAMLR / Antarctica conservation from Belgium are coming to Concarneau marine station to work on Galaxy Ecology use in their projects, we propose to create an open event, where colleagues from CCAMLR / Antarctica (1/3)

📣 How can I analyse my texts, media, and data in the humanities and social sciences? You want to analyse your data, but do not know how? Do you want to consider good research data management, but do not know how? Galaxy is here for you! This coffee lecture hosted by FDM Thüringen gives you (1/2)

We are pleased to announce a new release of https://BRC-Analytics.org (v0.17.0). This release updates the number of included organisms to 1900+ and over 5000 assemblies from all across the taxonomic spectrum, and more improvements to searching ENA and the workflow config UI. (1/3)

Galaxy showed how 'one framework, one workflow, many communities' can run cross-disciplinary imaging analyses on the emerging EOSC Federation. Here is what we presented, with slides and video. https://galaxyproject.org/news/2025-11-13-eosc-symposium2025/ ##UseGalaxy ##GalaxyProject ##EOSC (1/2)

Data Terra, the EOSC thematic node for the environment, demonstrated how the Galaxy platform accelerates environmental research through interoperable, FAIR data workflows within the EOSC Federation. From satellite plumes to ecosystem blooms. (1/2)

We’re inviting Expressions of Interest to join the GCC2026 Scientific Committee. If you’re passionate about open science, training, and community-driven research, we’d love to hear from you! Please fill out the Expression of Interest form: forms.gle/gp4DhnCBA16n...

Galaxy showed up strong at Genome Informatics 2025 with new posters, new tools, and new ideas for making genomics more open and accessible. Catch the highlights from Anton Nekrutenko, Mike Schatz, and Delphine Larivière 👉 galaxyproject.org/news/2025-11...

Collaboration and innovation with the Galaxy Europe team https://galaxyproject.org/news/2025-10-20-galaxy-guest-researcher/ ##UseGalaxy ##GalaxyProject ##EOSC

European Galaxy Days 2025 might be over, but the talks aren’t. Explore our new playlist featuring highlights from EGD2025 YouTube Playlist: https://youtube.com/playlist?list=PLNFLKDpdM3B9YxK0suz3VN-dSaKmWAhk-&si=tLCu61CpkgGiplaw News Item: (1/2)

If you're at Genome Informatics ##GI2025 this week, be sure to stop by the 3 Galaxy posters to chat with Delphine, Mike and Anton about great new things in Galaxy. (1/5)

Congrats to all three recipients! To learn more about the James P. Taylor Foundation for Open Science and this scholarship, go to jxtxfoundation.org/news/2025-01.... Enjoy the conference! [8/8]

His current project integrates RNA-seq data across species to identify conserved and differential gene programs—revealing fundamental principles of gene regulation and evolution. Ryan enjoys playing soccer, hockey, and piano. ⚽🏒🎹 [7/8]

Congrats to Ryan Moreno for winning a JXTX scholarship to Genome Informatics! Ryan is a PhD student in Biomed Data Science at UW-Madison, advised by Dr Sushmita Roy. He leverages evolutionary info to enhance computational analyses of gene regulation and expression. [6/8]

These core areas are essential for extracting meaningful insights from sequencing data. She's also worked analyzing ancient DNA. For fun, Megan enjoys reading, playing bridge and performing on piano and oboe. 🎹🎶 [5/8]

Congrats to Megan Le for winning a JXTX scholarship to Genome Informatics! Megan is a PhD student in Computer Science at MIT, advised by Drs. Heng Li and Bonnie Berger. She develops algorithms for genome analysis, tackling problems in genome assembly, variant calling, and read alignment. [4/8]

Her work tackles challenges in understanding gene expression at the transcript level, with major implications for precision medicine. When not in the lab, you'll find Zoe rock climbing, reading, or hanging out with her cat. 🧬🐱

Congrats to Zoe Rudnick for winning a JXTX scholarship to Genome Informatics! Zoe is a 2nd-year PhD student in Biomedical Engineering at Johns Hopkins, developing algorithms to analyze RNA-seq data—incl long-read and single-cell datasets—to improve isoform quantification.

The James P. Taylor Foundation for Open Science is pleased to announce the recipients of the 2025 JXTX+CSHL Genome Informatics Scholarships. JXTX provides support for students to attend conferences in CompBio and data science, where they can present their work [1/8]

🧠 Your Galaxy history too complex? Name tags make it easy to track dataset origins and relationships across analyses—no endless renaming needed https://galaxyproject.org/news/2025-11-4-tags/ ##GalaxyProject ##Bioinformatics ##Reproducibility

🌿 Ready to hack biodiversity with Galaxy? Join the GTN Ecology Training & Collaboration Fest — three days of hands-on learning, data exploration, and open-science fun! 📅 Nov 25–27 | Hybrid (Concarneau 🇫🇷 + online) 📝 Register for free by Nov 20 training.galaxyproject.org/training-mat...

🐛 Galaxy not working? Don't suffer in silence — report it! Use the built-in reporting feature when something goes wrong. Read more here: https://galaxyproject.org/news/2025-10-30-squish-the-bug/ Let's make Galaxy better together!

Workflows by day, French wine and cheese by night 🍷🧀 Get ready to join us in Clermont-Ferrand, France for #GCC2026, June 22–26 2026! Learn, collaborate, and celebrate open science in the heart of Auvergne. galaxyproject.org/news/2025-10...

RSpace joins the Galaxy https://galaxyproject.org/news/2025-06-23-rspace-integration/ @researchspace.com ##UseGalaxy ##GalaxyProject ##EOSC ##ELN ##RDM ##RSpace

There is a little known Galaxy feature called "window manager". See how to use it ... https://galaxyproject.org/news/2025-10-28-window-manager/

🌿 Will you be at #PAG33? Galaxy will be in San Diego for the International Plant & Animal Genome Conference (Jan 9–14, 2026), and we’d love to know who from the Galaxy Community will be there! Let us know 👉 forms.gle/26PRwMH46aho...

Know How Sciensano harnesses Galaxy for Advanced Microbial Genomics, Precision Typing, and Rapid Outbreak Detection http://galaxyproject.org/news/2025-04-25-galaxy-at-sciensano/ ##UseGalaxy ##GalaxyProject ##EOSC ##EuroScienceGateway

Use parallel-download to get data from NCBI SRA. See how here -> https://galaxyproject.org/news/2025-10-23-sra-download/

Specification for RO-Crate 1.2 released https://galaxyproject.org/news/2025-06-04-ro-crate-1-2-release/ ##UseGalaxy ##GalaxyProject ##EOSC ##EuroScienceGateway ##rocrate ##fair ##research_data ##research ##data

📝 New blog post Released! https://galaxyproject.org/news/2025-02-13-cellxgene-vip/ CELLxGENE-VIP (Visualization In Plugin) is an extension of the original CELLxGENE: https://github.com/chanzuckerberg/cellxgene tool developed by the Chan Zuckerberg Initiative. It can efficiently extract deep (1/4)

Galactic views on the Conference on Research Data Infrastructure (CoRDI): https://galaxyproject.org/news/2025-08-29-cordi/ ##UseGalaxy ##GalaxyProject ##NFDI ##UniFreiburg ##RDM

Discover one of Galaxy’s true superpowers — dataset collections! 🌟 Check out the blog (https://galaxyproject.org/news/2025-10-21-whycollections/) and video (https://youtu.be/yehY9tR_NX8?si=YH9CZ5KGWm2yVyPA) to see how they can simplify your workflows. You might just find yourself wondering, (1/2)

My internship experience with assembling genomes and annotating them during a 6 week internship at Freiburg Galaxy. https://galaxyproject.org/news/2025-07-22-ming-li-internship/ ##UseGalaxy ##GalaxyProject ##EOSC ##Bioinformatics ##Genomics ##GenomeAssembly ##GenomeAnnotation ##TrainingProgram (1/2)

How do you train the next generation of open-science explorers? With Galaxy, collaboration, and a bit of computational magic. https://training.galaxyproject.org/training-material/news/2025/07/17/gta-overview.html ##UseGalaxy ##GalaxyProject ##EOSC ##GalaxyTraining ##OpenScience ##Bioinformatics (1/2)

Science, volcanoes, and the Galaxy community...what more could you ask for? 🌋🇫 In case you missed it! The Galaxy Community Conference (#GCC2026) lands in Clermont-Ferrand, France, June 22–24, 2026! CoFest follows from June 25–26. Learn more and sign up for emails: galaxyproject.org/events/gcc20...

Flexynesis: bridging multi-omics complexity with transparent AI for Cancer research and beyond https://galaxyproject.org/news/2025-10-16-flexynesis-nature-comms/ ##UseGalaxy ##GalaxyProject ##EOSC ##UniFreiburg ##NatureCommunications ##ScientificResearch ##deeplearning ##precision_medicine ##open_science

Comprehensive Single-Cell Reference Atlases Ready for Import https://galaxyproject.org/news/2025-10-16-tabula-atlas/ ##UseGalaxy ##GalaxyProject ##EOSC ##UniFreiburg ##Single-cell ##tabula_sapiens ##Tabula_muris_senis

1–3 Oct 2025, Freiburg: European Galaxy Days, ELIXIR Galaxy, and EuroScienceGateway members convened to align roadmaps and turn plans into solutions, tools, and workflows through talks, demos, and a CoFest. https://galaxyproject.org/news/2025-10-15-egd2025/ ##UseGalaxy ##GalaxyProject ##EOSC (1/2)