Claire Menard
@clairecodes.bsky.social
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PhD Candidate studying “jumping genes” in maize 🌽 | Hirsch Lab | Bioinformatics & Genomics | she/her
pinned post!
My first first author manuscript has posted! I’m very excited to share SWIF-TE with yall. It is a fast, memory efficient tool to identify novel TE insertions from short-read data. 🧬
#TEworldwide
#transposons
add a skeleton here at some point
9 months ago
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Excited to say that I am on the job market and will be looking for postdoc or job opportunities either remotely or in the Seattle, WA area. I will be finishing up my PhD in Plant Genomics/Bioinformatics sometime late summer or early fall of this year. Please let me know if you know of anything!
about 2 months ago
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reposted by
Claire Menard
Dr. Tyler A. Elliott
3 months ago
#TEsky
EDTA-GUI: a plant-optimized graphical implementation of the EDTA pipeline enabling lineage-level classification and analysis
doi.org/10.1186/s128...
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EDTA-GUI: a plant-optimized graphical implementation of the EDTA pipeline enabling lineage-level classification and analysis - BMC Genomics
BMC Genomics - Transposable elements (TEs) are major components of plant genomes, shaping genome architecture, gene regulation, and evolutionary innovation. While the Extensive de novo TE Annotator...
https://doi.org/10.1186/s12864-026-12588-z
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I’m headed to
#PAG33
in San Diego, CA this week! Very excited to present a poster on some LTR TE family clustering titled “Full Sequence Clustering Reveals Hidden Structural Diversity and Evolutionary Dynamics in LTR Retrotransposon Families”. I’ve attached the abstract if you’d like to read more.
4 months ago
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My first first author manuscript has posted! I’m very excited to share SWIF-TE with yall. It is a fast, memory efficient tool to identify novel TE insertions from short-read data. 🧬
#TEworldwide
#transposons
add a skeleton here at some point
9 months ago
3
78
22
reposted by
Claire Menard
Nature Plants
about 1 year ago
New Resource: "Transposon proliferation drives genome architecture and regulatory evolution in wild and domesticated peppers"
rdcu.be/d7YSt
11 genomes of wild and domesticated pepper: transposable elements have shaped the evolution of genome structure.
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