Genetics ML Papers
@geneticsmlpapers.bsky.social
📤 50
📥 1
📝 892
MLDAAPP: machine learning data acquisition for assessing population phenotypes
https://academic.oup.com/g3journal/article/doi/10.1093/g3journal/jkaf173/8220571
7 days ago
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Genomic and hyperspectral imaging-based prediction blending enables selection for reduced deoxynivalenol content in wheat grains
https://academic.oup.com/g3journal/article/doi/10.1093/g3journal/jkaf176/8223452
7 days ago
0
0
0
MyESL: A Software for Evolutionary Sparse Learning in Molecular Phylogenetics and Genomics
https://academic.oup.com/mbe/article/doi/10.1093/molbev/msaf224/8254024
7 days ago
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1
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Interpreting Supervised Machine Learning Inferences in Population Genomics Using Haplotype Matrix Permutations
https://academic.oup.com/mbe/article/doi/10.1093/molbev/msaf250/8276164
7 days ago
0
2
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Modelling transcription with explainable AI uncovers context-specific epigenetic gene regulation at promoters and gene bodies
https://journals.plos.org/plosgenetics/article
7 days ago
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Screening of Oyster Peptides for Anti-Muscle Atrophy Based on Machine Learning and Computer Simulation: Guided by Antioxidant Pathways
https://www.biorxiv.org/content/10.1101/2025.10.28.685008v1
7 days ago
0
1
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DCBK: A Fragment-Based Hybrid Simulation and Machine Learning Framework for Predicting Ligand Dissociation Kinetics
https://www.biorxiv.org/content/10.1101/2025.11.01.685950v1
7 days ago
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Oyster: a neural network for modelling genomic sequences that enables exact position-specific k-mer contributions
https://www.biorxiv.org/content/10.1101/2025.11.01.686014v1
7 days ago
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0
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PRSformer: Disease Prediction from Million-Scale Individual Genotypes
https://www.biorxiv.org/content/10.1101/2025.10.26.684578v1
7 days ago
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0
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Genomic Prediction and SNP Importance Analysis for Agronomic Traits in Two Coffea canephora Populations
https://www.biorxiv.org/content/10.1101/2025.10.31.685932v1
7 days ago
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0
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A spatiotemporal analysis of the effect of urbanization on birdsong
https://www.biorxiv.org/content/10.1101/2025.10.30.685579v1
7 days ago
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0
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Generative models for antimicrobial peptide design: auto-encoders and beyond
https://www.biorxiv.org/content/10.1101/2025.10.29.685317v1
7 days ago
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ProteinSight: A Volumetric Deep Learning Model for Carotenoid-Binding Site Prediction
https://www.biorxiv.org/content/10.1101/2025.10.30.685633v1
7 days ago
0
0
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ProAffinity++
https://www.biorxiv.org/content/10.1101/2025.10.31.685718v1
7 days ago
0
0
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LINKER-Pred: A Public Web Server for Accurate Prediction of Disordered Flexible Linkers in Proteins
https://www.biorxiv.org/content/10.1101/2025.10.29.685455v1
7 days ago
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iDeepLC: chemical structure information yields improved retention time prediction of peptides with unseen modifications
https://www.biorxiv.org/content/10.1101/2025.10.31.685771v1
7 days ago
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0
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Clair-Mosaic: A deep-learning method for long-read mosaic small variant calling
https://www.biorxiv.org/content/10.1101/2025.10.31.685831v1
7 days ago
0
0
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An Application for Automated Drosophila Locomotor Assay with Integrated Device Design and Computer Vision Tracking
https://www.biorxiv.org/content/10.1101/2025.10.31.685789v1
7 days ago
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Limitations of current machine learning models in predicting enzymatic functions for uncharacterized proteins
https://academic.oup.com/g3journal/article/doi/10.1093/g3journal/jkaf169/8211502
14 days ago
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0
0
MLDAAPP: machine learning data acquisition for assessing population phenotypes
https://academic.oup.com/g3journal/article/doi/10.1093/g3journal/jkaf173/8220571
14 days ago
0
0
0
Genomic and hyperspectral imaging-based prediction blending enables selection for reduced deoxynivalenol content in wheat grains
https://academic.oup.com/g3journal/article/doi/10.1093/g3journal/jkaf176/8223452
14 days ago
0
0
0
Fast and Memory-Efficient Dynamic Programming Approach for Large-Scale EHH-Based Selection Scans
https://academic.oup.com/mbe/advance-article/doi/10.1093/molbev/msaf275/8303545
14 days ago
0
1
0
MyESL: A Software for Evolutionary Sparse Learning in Molecular Phylogenetics and Genomics
https://academic.oup.com/mbe/article/doi/10.1093/molbev/msaf224/8254024
14 days ago
0
1
0
Interpreting Supervised Machine Learning Inferences in Population Genomics Using Haplotype Matrix Permutations
https://academic.oup.com/mbe/article/doi/10.1093/molbev/msaf250/8276164
14 days ago
0
1
0
Modelling transcription with explainable AI uncovers context-specific epigenetic gene regulation at promoters and gene bodies
https://journals.plos.org/plosgenetics/article
14 days ago
0
0
0
IRIS: A Machine Learning-Based Pose Re-Ranking Tool for RNA-Ligand Docking
https://www.biorxiv.org/content/10.1101/2025.10.24.684232v1
14 days ago
0
0
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Quantifying the impact of genetic mutations on enhancer dynamics
https://www.biorxiv.org/content/10.1101/2025.10.21.683558v1
14 days ago
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0
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Bibliometric Insights into Medical Data Science Applications in Genomics: Evidence from Kaggle and Dimensions Datasets
https://www.biorxiv.org/content/10.1101/2025.10.24.684317v1
14 days ago
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Cross-Species Insights from ART-D to Uncover Evolutionarily Conserved Oncogenic Mechanisms
https://www.biorxiv.org/content/10.1101/2025.10.20.683390v1
14 days ago
0
0
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Benchmarking Perturbation Tools for the Noncoding Genome
https://www.biorxiv.org/content/10.1101/2025.10.21.683665v1
14 days ago
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0
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Gradient-based Optimization for mRNA Sequence Design
https://www.biorxiv.org/content/10.1101/2025.10.22.683691v1
14 days ago
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0
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Accurate protein structure determination from cryo-EM maps using deep learning and structure prediction
https://www.biorxiv.org/content/10.1101/2025.10.23.684082v1
14 days ago
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Histology-informed spatial domain identification through multi-view graph convolutional networks
https://www.biorxiv.org/content/10.1101/2025.10.23.683862v1
14 days ago
0
0
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A novel attention mechanism for noise-adaptive and robust segmentation of microtubules in microscopy images
https://www.biorxiv.org/content/10.1101/2025.10.23.684152v1
14 days ago
0
0
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M-DeepAssembly2: A Web Server for Predicting Multiple Conformations of Multi-domain Proteins Using Deep Learning
https://www.biorxiv.org/content/10.1101/2025.10.23.684122v1
14 days ago
0
0
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Universal super-resolution for subcellular fluorescence imaging
https://www.biorxiv.org/content/10.1101/2025.10.26.683961v1
14 days ago
0
0
0
Limitations of current machine learning models in predicting enzymatic functions for uncharacterized proteins
https://academic.oup.com/g3journal/article/doi/10.1093/g3journal/jkaf169/8211502
21 days ago
0
0
1
MLDAAPP: machine learning data acquisition for assessing population phenotypes
https://academic.oup.com/g3journal/article/doi/10.1093/g3journal/jkaf173/8220571
21 days ago
0
0
0
Genomic and hyperspectral imaging-based prediction blending enables selection for reduced deoxynivalenol content in wheat grains
https://academic.oup.com/g3journal/article/doi/10.1093/g3journal/jkaf176/8223452
21 days ago
0
0
0
MyESL: A Software for Evolutionary Sparse Learning in Molecular Phylogenetics and Genomics
https://academic.oup.com/mbe/article/doi/10.1093/molbev/msaf224/8254024
21 days ago
0
1
0
New proteomic biomarkers identified in plasma extracellular vesicles in sarcoidosis: a case-control matched study
https://www.biorxiv.org/content/10.1101/2025.10.14.682425v1
21 days ago
0
0
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Lectin Microarray-based Glycomics and Machine Learning Identify Shared Osteoarthritis Biomarkers in Humans, Dogs, and Horses
https://www.biorxiv.org/content/10.1101/2025.10.16.682971v1
21 days ago
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0
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Integrative metabolome-genome analysis reveals the genetic architecture of metabolic diversity in sorghum grain
https://www.biorxiv.org/content/10.1101/2025.10.14.682411v1
21 days ago
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0
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Building an epigenetic clock: Utilizing whole genome DNA methylation patterns to predict age in haddock, Melanogrammus aeglefinus
https://www.biorxiv.org/content/10.1101/2025.10.16.682892v1
21 days ago
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Neural network-based cross-species chromatin annotation goes beyond sequence conservation
https://www.biorxiv.org/content/10.1101/2025.10.16.682871v1
21 days ago
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Mechanistic Genome Folding at Scale through the Differentiable Loop Extrusion Model
https://www.biorxiv.org/content/10.1101/2025.10.17.682904v1
21 days ago
0
0
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Robust footprinting with sample-specific Tn5 bias correction for bulk and single cell ATAC-seq
https://www.biorxiv.org/content/10.1101/2025.10.17.683160v1
21 days ago
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0
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MAP-PRS: Multi-Ancestry Portfolio-Based Polygenic Risk Scores
https://www.biorxiv.org/content/10.1101/2025.10.15.682516v1
21 days ago
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0
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Deep learning the dynamic regulatory sequence code of cardiac organoid differentiation
https://www.biorxiv.org/content/10.1101/2025.10.15.680997v1
21 days ago
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0
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The persistence and loss of hard selective sweeps amid ancient human admixture
https://www.biorxiv.org/content/10.1101/2025.10.14.682443v1
21 days ago
0
0
0
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