1/ I’m excited to share recent work on inferring cell-cell interactions using attention by @justjhong.bsky.social and me, supervised by @elhamazizi.bsky.social . Open the thread 🧵 for a brief overview of our method. bioRxiv link: www.biorxiv.org/content/10.1....

For our third Computational Spatial Biology seminar, we will be speaking with @wencksternjo.bsky.social about VirTues, a foundation model framework for analyzing complex tissue architectures. Tune in this Wed, May 7 @ 11AM ET! Full schedule and last week's recording: csbseminar.github.io

For our next Computational Spatial Biology seminar, we will talking with @siyuhe.bsky.social about CORAL, a deep graph generative model learning integrated representations of multimodal spatial omics data. Tune in next Wednesday, April 30 @ 12PM ET! Full schedule: csbseminar.github.io

To kick off the Computational Spatial Biology seminar series with Nathan Levy, we will be discussing LUNA with Yist Yu from EPFL. LUNA is a generative AI model that reassembles complex tissue structures from gene expressions of cells. Tune in next Wednesday, April 9 @ 11AM ET!

Announcing the Computational Spatial Biology seminar! With Nathan Levy (Yosef Lab), we’re bringing together researchers at the intersection of AI & spatial biology to share their work. Kicking off April 9th with Yist Yu presenting LUNA! Explore the lineup here: csbseminar.github.io

🧵 Excited to share #Echidna, a Bayesian framework for quantifying the impact of gene dosage on phenotypic plasticity: tinyurl.com/296kf7hf! With @elhamazizi.bsky.social and @mingxz.bsky.social, we integrate scRNA-seq & WGS to uncover how CNAs drive tumor evolution and transcriptional variability.

I am very excited to share our new Neurips 2024 paper + package, Treeffuser! 🌳 We combine gradient-boosted trees with diffusion models for fast, flexible probabilistic predictions and well-calibrated uncertainty. paper: arxiv.org/abs/2406.07658 repo: github.com/blei-lab/tre... 🧵(1/8)

I've followed just the right set of accounts that my feed is just pictures of space and cats doing weird stuff. I'll add more, but for now... it's perfect