Marc Choisy
@mchoisy.bsky.social
📤 849
📥 125
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Head of Mathematical Modelling Oxford University Clinical Research Unit Ho Chi Minh City, Vietnam
Using GPS trackers to understand how human movement patterns influence the epidemiology of pathogens causing acute encephalitis syndrome in Ha Nam province, Vietnam
wellcomeopenresearch.org/articles/11-...
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https://wellcomeopenresearch.org/articles/11-254/v1
17 days ago
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Compartments models with an explicit modeling of the distributions of the waiting times in compartments, made easy in R:
doi.org/10.1111/2041...
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denim: An R package for deterministic compartmental models with flexible dwell‐time distributions
Compartmental models are widely used for dynamical systems where states are discrete, such as in infectious disease epidemiology with the so-called Susceptible-Infectious-Recovered (SIR) framework...
https://doi.org/10.1111/2041-210x.70256
3 months ago
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gregorygundersen.com/blog/2025/10...
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A History of Large Language Models
https://gregorygundersen.com/blog/2025/10/01/large-language-models/
4 months ago
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Today is the World AIDS day and also the 21st anniversary of my PhD defense (on HIV, among others).
6 months ago
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Scalable, open-access and multidisciplinary data integration pipeline for climate-sensitive diseases:
doi.org/10.12688/wel...
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https://doi.org/10.12688/wellcomeopenres.24774.2
6 months ago
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Producing high quality high resolution grid rainfall data from global climatic models outputs through a combination of dynamical downscaling techniques and machine learning algorithms:
link.springer.com/article/10.1...
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Performance and added value of a high-resolution (2 km) rainfall product based on WRF-downscaled ERA5 for Ho Chi Minh City, Vietnam - Theoretical and Applied Climatology
Although the fifth-generation ECMWF reanalysis (ERA5) reanalysis dataset at 0.25º resolution and its land-specific product (ERA5-Land) at 0.1º resolution are widely used, they still remain too coarse ...
https://link.springer.com/article/10.1007/s00704-025-05894-1
6 months ago
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Climate and predation drive variation of diel activity patterns in chacma baboons (Papio ursinus) across Southern Africa:
www.nature.com/articles/s41...
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Climate and predation drive variation of diel activity patterns in chacma baboons (Papio ursinus) across Southern Africa - Scientific Reports
Scientific Reports - Climate and predation drive variation of diel activity patterns in chacma baboons (Papio ursinus) across Southern Africa
https://www.nature.com/articles/s41598-025-23151-3
6 months ago
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Can we use hospital residual serum samples to predict the risk of an outbreak? Giving some answers to this question using the 2024 measles outbreak in Ho Chi Minh City, Vietnam, in a study conducted in collaboration with the Ho Chi Minh City CDC (HCDC).
wwwnc.cdc.gov/eid/article/...
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Detection of Immunity Gap before Measles Outbreak, Ho Chi Minh City, Vietnam, 2024
Detection of Immunity Gap before Measles Outbreak, Ho Chi Minh City, Vietnam, 2024
https://wwwnc.cdc.gov/eid/article/31/10/25-0234_article
7 months ago
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www.helloquitx.com
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HelloQuitX - Let's Quit X together]
https://www.helloquitx.com
over 1 year ago
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www.science.org/doi/10.1126/...
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Preventing bad behavior in academia
We gave young scientists this prompt: Describe one change to scientific policy or culture that would substantially decrease incidents of scientific misconduct or other unethical behavior.
https://www.science.org/doi/10.1126/science.adr0734
over 1 year ago
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Genomic insights unveil the plasmid transfer mechanism and epidemiology of hypervirulent Klebsiella pneumoniae in Vietnam
www.nature.com/articles/s41...
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Genomic insights unveil the plasmid transfer mechanism and epidemiology of hypervirulent Klebsiella pneumoniae in Vietnam - Nature Communications
Hypervirulent Klebsiella pneumoniae (hvKp) is a significant cause of severe community-acquired infection, primarily in Asia. Here, the authors characterise the genetic profile, phylogenetic structure,...
https://www.nature.com/articles/s41467-024-48206-3
over 1 year ago
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