Charles Wei
@rositea.bsky.social
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📥 212
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PhD student at Cambridge | AMR | genomic surveillance | microbiome
Tired of fragmented bacterial GWAS workflows? Try BaGPipe (Bacterial GWAS Pipeline)—a fully automated, flexible Nextflow pipeline integrating Pyseer for streamlined association studies. Reproducible. Scalable. Efficient.
doi.org/10.1101/2025...
#Nextflow
#BacterialGWAS
#AMR
#Bioinformatics
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BaGPipe: an automated, reproducible, and flexible pipeline for bacterial genome-wide association studies
Microbial genome-wide association study (GWAS) tools often require manual data processing steps, lack comprehensive workflows, and are limited by scalability issues, thus hindering the exploration of ...
https://doi.org/10.1101/2025.02.28.640835
7 months ago
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reposted by
Charles Wei
Pathogen Dynamics Unit
9 months ago
Hello world! After a year in the making, the Pathogen Dynamics Unit is ready to launch! Check out our website (
pdu.gen.cam.ac.uk
) and follow the team (
bsky.app/profile/did:...
) to keep up with the latest from our infectious disease supergroup based at
@geneticscam.bsky.social
add a skeleton here at some point
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