phyloseminar.org
@phyloseminar.bsky.social
📤 388
📥 4
📝 37
A free online seminar about phylogenetics.
Cedric Chauve (Simon Fraser University) will be speaking in 24 hours on "Handling uncertainty in ancestral gene orders reconstruction"
www.youtube.com/watch?v=EsvF...
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Phyloseminar #156: Cedric Chauve (Simon Fraser University)
Handling uncertainty in ancestral gene orders reconstruction Over the last thirty years, the algorithms used for reconstructing ancestral gene orders from extant gene orders have evolved from…
https://www.youtube.com/watch?v=EsvFwGQqC5A
3 months ago
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Next talk: Cedric Chauve (Simon Fraser University) on "Handling uncertainty in ancestral gene orders reconstruction" Monday, April 27, 2026 at 9:00 AM PDT
4 months ago
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Darrin Schultz (Stanford University) will be speaking in 24 hours on "Understanding animal evolution through multi-scale synteny"
www.youtube.com/watch?v=714Z...
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Phyloseminar #155: Darrin Schultz (Stanford University)
Understanding animal evolution through multi-scale synteny Animal genomes record evolutionary history across multiple scales, from local gene neighborhoods to chromosome-wide architectures, but most…
https://www.youtube.com/watch?v=714Z_fUY1Ik
4 months ago
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Next talk: Darrin Schultz (Stanford University) on "Understanding animal evolution through multi-scale synteny" Monday, March 16, 2026 at 9:00 AM PDT
4 months ago
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Nadia El-Mabrouk (Université de Montréal) will be speaking in 24 hours on "Reconstructing the evolution of homologous genomic regions through gain and loss events"
www.youtube.com/watch?v=VuvN...
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Phyloseminar #154: Nadia El-Mabrouk (Université de Montréal)
Reconstructing the evolution of homologous genomic regions through gain and loss events Several biological systems rely on sets of colocalized genes sharing a common evolutionary history, and…
https://www.youtube.com/watch?v=VuvNKGVxcVc
4 months ago
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Our next three talks will be on genomic evolution and synteny. First talk: Nadia El-Mabrouk (Université de Montréal) on "Reconstructing the evolution of homologous genomic regions through gain and loss events" pn Thursday, March 5 at 9:00 AM PST.
5 months ago
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Trevor Graham (Institute for Cancer Research, London) will be speaking in 24 hours on "Quantitative measurement of cancer evolutionary history from single-sample bulk DNA methylation data"
www.youtube.com/watch?v=8shM...
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Phyloseminar #153: Trevor Graham (Institute for Cancer Research, London)
Quantitative measurement of cancer evolutionary history from single-sample bulk DNA methylation data Cancers evolve. Current methods to measure evolutionary dynamics rely on genome sequencing of…
https://www.youtube.com/watch?v=8shMgc0DyyM&ab_channel=phyloseminar.org
8 months ago
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Next talk: Trevor Graham (Institute for Cancer Research, London) on "Quantitative measurement of cancer evolutionary history from single-sample bulk DNA methylation data" Monday, November 24 at 9:00 AM PST.
9 months ago
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Ben Raphael (Princeton) will be speaking in 24 hours on "Tumor Evolution over Space and Time"
www.youtube.com/watch?v=j19t...
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Phyloseminar #152: Ben Raphael (Princeton)
Tumor Evolution over Space and Time Cancer is the result of an evolutionary process where genomic mutations and epigenetic alterations accumulate in cells that form a tumor. Modern single-cell and…
https://www.youtube.com/watch?v=j19tV9eM_do&ab_channel=phyloseminar.org
9 months ago
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Next talk: Ben Raphael (Princeton) on "Tumor Evolution over Space and Time" Monday, October 20 at 9:00 AM PDT.
10 months ago
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Niko Beerenwinkel (ETH Zurich) will be speaking in 24 hours on "Modeling tumor progression from single-cell sequencing data." Link:
www.youtube.com/watch?v=IVR7...
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Phyloseminar #151: Niko Beerenwinkel (ETH Zurich)
Modeling tumor progression from single-cell sequencing data Cancer progression is a somatic evolutionary process characterized by the accumulation of genetic alterations and responsible for tumor…
https://www.youtube.com/watch?v=IVR7YYHpJMI&ab_channel=phyloseminar.org
10 months ago
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The next 3 talks will be on the intersection of phylogenetics and cancer research. First talk: Niko Beerenwinkel (ETH Zurich) on "Modeling tumor progression from single-cell sequencing data." Tuesday, September 16 at 9:00 AM PDT.
10 months ago
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Arianna Miles-Jay (Michigan Department of Health and Human Services) will be speaking in 24 hours on "Applying phylogenetics in public health: Past, present, and potential for the future." Link:
www.youtube.com/watch?v=bMqj...
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Phyloseminar #150: Arianna Miles-Jay (Michigan Department of Health and Human Services)
Applying phylogenetics in public health: Past, present, and potential for the futureWith the rapid growth of pathogen genomics in public health comes the inc...
https://www.youtube.com/watch?v=bMqjne9rcUs
11 months ago
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Next talk: Arianna Miles-Jay (Michigan Department of Health and Human Services) on "Applying phylogenetics in public health: Past, present, and potential for the future." Tuesday, August 12, 2025 at 9:00 AM PDT
about 1 year ago
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Alli Black (Washington State Department of Health) will be speaking in 24 hours on "Practicing the theory: Applying genomic epidemiology to guide public health action" Link:
www.youtube.com/watch?v=D__w...
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Phyloseminar #149: Alli Black (Washington State Department of Health)
Practicing the theory: Applying genomic epidemiology to guide public health action
https://www.youtube.com/watch?v=D__wFAj7ZT0
about 1 year ago
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Next talk: Alli Black (Washington State Department of Health) on "Practicing the theory: Applying genomic epidemiology to guide public health action." Tuesday, July 15 at 9:00 AM PDT.
about 1 year ago
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Henry Kunerth (Minnesota Department of Health) will be speaking in 24 hours on "Genomic Surveillance of Human Respiratory Syncytial Virus in Minnesota – Statewide Efforts, Global Impacts." Link:
www.youtube.com/watch?v=e97k...
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Phyloseminar #148: Henry Kunerth (Minnesota Department of Health)
Genomic Surveillance of Human Respiratory Syncytial Virus in Minnesota – Statewide Efforts, Global ImpactsOver the past two respiratory seasons, we’ve succes...
https://www.youtube.com/watch?v=e97k29hPlTU
about 1 year ago
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Next we will have a trio of talks on public heath. Henry Kunerth (Minnesota Department of Health) will start things off with a talk on "Genomic Surveillance of Human Respiratory Syncytial Virus in Minnesota – Statewide Efforts, Global Impacts" Tuesday, June 17 at 9:00 AM PDT.
about 1 year ago
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Antoine Koehl (UC Berkeley) will be speaking on "Deep Models of Protein Evolution" in 24 hours. Link:
www.youtube.com/watch?v=SgZv...
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Phyloseminar #147: Antoine Koehl (UC Berkeley)
Deep Models of Protein EvolutionModels of protein evolution seek to quantify how proteins evolve over time while experiencing intricate constraints and adapt...
https://www.youtube.com/watch?v=SgZv0lEKvZ0
about 1 year ago
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Next talk: Antoine Koehl (UC Berkeley) on "Deep Models of Protein Evolution" Tuesday, May 27 at 9:00 AM PDT
about 1 year ago
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Pierre Barrat-Charlaix (Politecnico di Torino) will be speaking on "Reconstruction of ancestral protein sequences using autoregressive generative models" in 24 hours. Link:
www.youtube.com/watch?v=-wqg...
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Phyloseminar #146: Pierre Barrat-Charlaix (Politecnico di Torino)
Reconstruction of ancestral protein sequences using autoregressive generative modelsAncestral sequence reconstruction (ASR) is an important tool to understan...
https://www.youtube.com/watch?v=-wqgE4YRLP0
about 1 year ago
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This talk has been moved 24 hours and 30 minutes later, to Wednesday, May 21, 2025 at 9:30 AM PDT.
bsky.app/profile/phyl...
add a skeleton here at some point
about 1 year ago
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Next talk: Pierre Barrat-Charlaix (Politecnico di Torino) on "Reconstruction of ancestral protein sequences using autoregressive generative models" Tuesday, May 20 at 9:00 AM PDT
about 1 year ago
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Faruck Morcos (UT Dallas) will be speaking on "Modeling sequence evolution by learning epistatic terms from protein families" in 24 hours. Link:
www.youtube.com/watch?v=gpZ_...
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Phyloseminar #145: Faruck Morcos (UT Dallas)
Modeling sequence evolution by learning epistatic terms from protein familiesThe use of coevolutionary information, i.e. the knowledge of amino acid or nucle...
https://www.youtube.com/watch?v=gpZ_p71lAdE
about 1 year ago
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Next talk: Faruck Morcos (UT Dallas) on "Modeling sequence evolution by learning epistatic terms from protein families" Tuesday, April 29, 2025 at 9:00 AM PDT
over 1 year ago
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This talk has been postponed until May 27th.
bsky.app/profile/did:...
add a skeleton here at some point
over 1 year ago
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Next we will have a trio of talks on next-generation sequence evolution models. Antoine Koehl
@antoinekoehl.bsky.social
(UC Berkeley) will start things off with a talk "Deep Models of Protein Evolution" on Tuesday, April 1 at 9:00 AM PDT.
over 1 year ago
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Qianying Lin (Los Alamos) will be speaking on "Segment trees can not identify viral genomic reassortment" in 24 hours.
buff.ly/4hV1WFh
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Phyloseminar #144: Qianying Lin (Los Alamos)
Segment trees can not identify viral genomic reassortmentReassortment is an evolutionary process common in viruses with segmented genomes. These viruses can ...
https://buff.ly/4hV1WFh
over 1 year ago
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Next talk: Qianying Lin (Los Alamos) on "Segment trees can not identify viral genomic reassortment" Wednesday, March 12 at 9:00 AM PDT
over 1 year ago
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Our site appears to be down, but we are casting Aaron King's seminar at
https://buff.ly/3QeJb3Z
now!
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Phyloseminar #143: Aaron King (Michigan)
Phylodynamics via Markov genealogy processes (2/2)Phylodynamic inference allows us to extract information on determinants of epidemic dynamics from sampled p...
https://buff.ly/3QeJb3Z
over 1 year ago
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The second talk from Aaron King (Michigan) on "Phylodynamics via Markov genealogy processes" will be starting in 24 hours.
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Phyloseminar #143: Aaron King (Michigan)
Phylodynamics via Markov genealogy processes (2/2)Phylodynamic inference allows us to extract information on determinants of epidemic dynamics from sampled p...
https://buff.ly/4g2hMwG
over 1 year ago
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Aaron King (Michigan) will be giving the second of two talks on "Phylodynamics via Markov genealogy processes" on Tuesday, February 11, 2025 at 9:00 AM PST.
over 1 year ago
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The first talk from Aaron King (Michigan) on "Phylodynamics via Markov genealogy processes" will be starting in 10 minutes.
www.youtube.com/watch?v=AQLr...
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Phyloseminar #142: Aaron King (Michigan)
YouTube video by phyloseminar.org
https://www.youtube.com/watch?v=AQLrU7fGtQA&ab_channel=phyloseminar.org
over 1 year ago
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Next, Aaron King (Michigan) will be giving two talks on "Phylodynamics via Markov genealogy processes". The first will be on Tuesday, January 14, 2025 at 9:00 AM PST.
over 1 year ago
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We passed the 15 year mark! Planning the 141st seminar now. Thanks to all the speakers, and all of you for getting the word out!
over 1 year ago
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We are here! All future seminar announcements will be posted here.
over 1 year ago
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you reached the end!!
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