Christian Dallago 11 months ago
GPUs are *fast* at aligning protein sequences (and profiles!). 178x faster than JackHMMER!
In ColabFold, 23x faster end-to-end compared to AlphaFold2 reaching the same accuracy!
You get immediate speedups for all methods leveraging MSAs, from DCA, to PoET, and even AlphaFold3!
add a skeleton here at some point