Miguel López Rivera
@riveralopz.bsky.social
📤 63
📥 91
📝 9
PhD student @ Harvard, Kranzusch Lab
pinned post!
(1/6) Thrilled to share this story! In our preprint from my PhD in the
@kranzuschlab.bsky.social
, with help from the Hatfull lab and
@soreklab.bsky.social
, we discover RyDEP, a phage-encoded RyR-domain glycosidase that allows phages to evade Thoeris defense. Highlights below!
doi.org/10.64898/202...
11 days ago
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reposted by
Miguel López Rivera
Jesse Shapiro
5 days ago
Cheap and easy method for nanopore sequencing phage DNA directly from plaques. Proud of lab members Brenna and Patrick for doing this work *with absolutely no help from me* !!
www.nature.com/articles/s41...
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Same-day tagmentation PCR-based whole genome sequencing of bacteriophage genomes from a single plaque without DNA extraction - Scientific Reports
Scientific Reports - Same-day tagmentation PCR-based whole genome sequencing of bacteriophage genomes from a single plaque without DNA extraction
https://www.nature.com/articles/s41598-026-55253-x
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reposted by
Miguel López Rivera
Martin Steinegger 🇺🇦
4 days ago
Folddisco is now published
@natbiotech.nature.com
. It’s a fast motif search for similar 3D DISCOntinuous residues like catalytic sites or zinc fingers across the entire protein universe. 📄
www.nature.com/articles/s41...
💾
folddisco.foldseek.com
🌐 https
://search.foldseek.com/folddisco
add a skeleton here at some point
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reposted by
Miguel López Rivera
Romi Hadary
7 days ago
Excited to see our work out in
@natmicrobiol.nature.com
! We uncovered broad functional diversity within phage sponge families🧽. Huge thanks to all coauthors and brilliant collaborators
@kranzuschlab.bsky.social
@reneechang.bsky.social
!
www.nature.com/articles/s41...
add a skeleton here at some point
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reposted by
Miguel López Rivera
Kranzusch Lab
7 days ago
@romihadary.bsky.social
and
@soreklab.bsky.social
's discovery that sponge proteins constitute enormous families of viral immune evasion factors is now out in
@natmicrobiol.nature.com
@reneechang.bsky.social
and our lab were happy to help with this story!
www.nature.com/articles/s41...
add a skeleton here at some point
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reposted by
Miguel López Rivera
Kranzusch Lab
11 days ago
A new function for RyR domains in nucleotide signaling! Excited to share
@riveralopz.bsky.social
's story at SISB2026 and the pre-print now. Thanks to
@reneechang.bsky.social
collaborators in Graham Hatfull's and
@soreklab.bsky.social
groups
@kfreeman.bsky.social
@romihadary.bsky.social
and Jim Sun
add a skeleton here at some point
1
17
1
(1/6) Thrilled to share this story! In our preprint from my PhD in the
@kranzuschlab.bsky.social
, with help from the Hatfull lab and
@soreklab.bsky.social
, we discover RyDEP, a phage-encoded RyR-domain glycosidase that allows phages to evade Thoeris defense. Highlights below!
doi.org/10.64898/202...
11 days ago
1
68
31
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