Yaron Orenstein
@yaronorenstein.bsky.social
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Associate Professor in Computer Science and Life Sciences at Bar-Ilan University
Excited to share this preprint which describe the IBIS challenge to predict TF binding sites across experimental assays. My students achieved best performance in the in vitro -> in vivo task! Thanks so much for the organizers for their herculean efforts!
add a skeleton here at some point
25 days ago
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Interested in a post-doc in Israel? The deadline for the Azrieli International Postdoctoral Fellowship is November 19. The fellowship offers generous funding for postdocs to conduct research in any academic discipline at eligible Israeli institutions:
azrielifoundation.org/fellows/inte...
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International Postdoctoral Fellowship - The Azrieli Foundation
The Azrieli Fellows Program is an elite group of academics who cultivate a network of leading professionals in Israel and around the world.
https://azrielifoundation.org/fellows/internationalpostdoctoral/
about 1 month ago
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The start of a new academic year at the Orenstein lab - we are excited to welcome three new MSc students: Yehuda, Evyatar, and Sapir, and continue with three PhD students: Ido, Jonathan, and Noam. Good luck in your studies and research!
about 2 months ago
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The GreedyMini paper is finally out as part of
#ISMBECCB2025
proceedings:
academic.oup.com/bioinformati...
. Arseny will present it on the last day (July 24th) and last session (14:20) of the HiTSeq meeting.
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GreedyMini: generating low-density DNA minimizers
AbstractMotivation. Minimizers are the most popular k-mer selection scheme in algorithms and data structures analyzing high-throughput sequencing (HTS) dat
https://academic.oup.com/bioinformatics/article/41/Supplement_1/i275/8199415
5 months ago
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🚨 Attention US PhDs in Bioinformatics: Interested in a postdoc in my group at Bar-Ilan University 🇮🇱 through the Fulbright Israel fellowship (2026–2027)? 🧬 2 years of research 💰 $95,000 stipend + relocation + benefits 📅 Apply by 15/9 🔗
www.fulbright.org.il/program/2/842
✉️ Email me!
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Fulbright Postdoctoral Fellowships at Bar-Ilan University | Fulbright
https://www.fulbright.org.il/program/2/842
5 months ago
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It was a delight to host my former PhD advisor Prof. Ron Shamir and hear about his current research on clustering cancer patients and standardising Parkinson's disease progression scores (in addition to the usual chit-chatting and updates...)
7 months ago
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reposted by
Yaron Orenstein
11 months ago
🚨 Deadline Extended: Call for Papers - RECOMB-seq 2025 🚨 Great news! You now have an extra week to submit your work. 🎉 Updated Deadlines: 🔹 Abstract Registration: Jan 31, 2025 🔹 Submission: Feb 7, 2025
recomb-seq.github.io/papers/
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Call for Papers
RECOMB-seq is the RECOMB Satellite Conference on Biological Sequence Analysis
https://recomb-seq.github.io/papers/
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reposted by
Yaron Orenstein
about 1 year ago
🚨 Call for Papers: RECOMB-seq 2025 🚨 🗓️ Dates: April 24-25, 2025 📍 Location: Seoul, South Korea Key deadlines: 🔹 Abstract registration: Jan 24, 2025 🔹 Submission: Jan 31, 2025 More details:
recomb-seq.github.io/papers/
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Call for Papers
RECOMB-seq is the RECOMB Satellite Conference on Biological Sequence Analysis
https://recomb-seq.github.io/papers/
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Excited to share FiSSC, a new method to find a smallest sequence cover of sets of degenerate reads. We prove that the problem is NP-hard, and suggest filtering steps and an ILP solution. We apply it to RNA A-to-I editing data to gauge biological complexity
dl.acm.org/doi/10.1145/...
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FiSSC: Finding smallest sequence covers to sets of degenerate reads with applications to RNA editing | Proceedings of the 15th ACM International Conference on Bioinformatics, Computational Biology and...
https://dl.acm.org/doi/10.1145/3698587.3701363
12 months ago
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