@jeanette-mumford.bsky.social
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Do you ever wish you could just use python to pull together the files and code for running FSL's randomise? Me too! I made this:
github.com/jmumford/ran...
It will even replace the numbers in the file outputs with contrast names of your choosing (and replace corrp with 1minusp).
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GitHub - jmumford/randomise-prep: Generate design matrices, contrasts, and scripts to set up FSL randomise analyses.
Generate design matrices, contrasts, and scripts to set up FSL randomise analyses. - jmumford/randomise-prep
https://github.com/jmumford/randomise-prep
11 days ago
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Interested in practical tips for assessing collinearity and why common fixes might not help? Come to the
#OHBM2025
oral session Friday at 11:30AM (P2)! I’ll share simulation results and
@demidenko.bsky.social
will present real data. Also, check out my poster Thursday (1051)!
3 months ago
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reposted by
James Kent
3 months ago
chng.it/gmWgmwwz6n
The Open Science Room needs your help!
add a skeleton here at some point
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reposted by
Eric W. Bridgeford, Ph.D.
5 months ago
Following a lot of hard work and dedicated effort from countless parties, our textbook providing a hands-on introduction to analyzing network data is now available for pre-order from Cambridge University Press
www.cambridge.org/core/books/h...
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Hands-On Network Machine Learning with Python
Cambridge Core - Pattern Recognition and Machine Learning - Hands-On Network Machine Learning with Python
https://www.cambridge.org/core/books/handson-network-machine-learning-with-python/9735741A096973A9C963E930BBAF5368
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Shameless plug for a useful tool tucked away in Appendix B of our preprint. A VIF calculation for *contrasts*, cVIF. A foolproof way to assess how collinearity is impacting what you're actually interested in! Code available on GitHub!
www.biorxiv.org/content/10.1...
github.com/jmumford/vif...
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https://www.biorxiv.org/content/10.1101/2025.01.14.633053v1.full.pdf
8 months ago
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Setting up an fMRI model and getting hit with collinearity errors? Been there! 😢 Try removing regressors? Orthogonal regressors? Other tricks to resolve collinearity errors? Guess what—those fixes might make things worse. We explore why and propose recommendations.
www.biorxiv.org/content/10.1...
8 months ago
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