John Quackenbush
@johnquackenbush.bsky.social
đ€ 1151
đ„ 1943
đ 51
Father, husband, scientist, professor, martial artist, scuba diver (in about that order).
reposted by
John Quackenbush
Jeremy Berg
16 days ago
A second email, this with a more substantial insight about "The Replication Crisis"... 1/5
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I caught Covid and am working from home, perplexing our two cats. One comes to the door of the "office," sits outside, cries, is let in, and settles next to the desk. Then the other one repeats the process, causing the other cat to leave. I believe I have evidence of the Paw-li exclusion principle.
17 days ago
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We view science as hypothesis testing, but where do hypotheses originate? From observing associations in systems we studyâwhether to fill known gaps or reveal the unexpected. SEAHORSE engineers serendipityâfinding unexpected associations, beginning with GTEx and TCGA.
www.biorxiv.org/content/10.1...
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SEAHORSE: A Serendipity Engine Assaying Heterogeneous Omics-Related Sampling Experiments
Large-scale, open-access data sets such as the Genotype Tissue Expression Project (GTEx) and The Cancer Genome Atlas (TCGA) include multi-omic data on large numbers of samples along with extensive cli...
https://www.biorxiv.org/content/10.1101/2025.08.15.670514v1
7 months ago
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After a long journey, a paper by my colleagues
@maudfagny.bsky.social
, John Platig, and Katherine Stone was published today. It builds on our earlier work in eQTL networks and casts polygenic trait selection in the context of regulatory network models, shedding new light on the process. Take a look!
add a skeleton here at some point
7 months ago
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This is a nice overview of both my work and the impact of federal research cuts. I am at the point where I need to think about reinventing myself because we are watching the destruction of the research enterprise in the US.
hsph.harvard.edu/news/how-doe...
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How does cancer progress? Gene behavior holds clues. | Harvard T.H. Chan School of Public Health
John Quackenbush does groundbreaking research that uses massive gene datasets to explore how diseases progress, particularly cancer.
https://hsph.harvard.edu/news/how-does-cancer-progress-gene-behavior-holds-clues/
9 months ago
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The irrationality of the war on science that the Trump Administration has been waging manifests as indiscriminate termination of individual projects and whole lines of inquiry based solely on "bad words" appearing in their descriptions.
#WarOnScience
@statnews.com
www.statnews.com/2025/04/23/u...
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Government word search is killing my cutting-edge research
The Trump administration seems to believe that some words and ideas fail an ill-posed and completely nonscientific test of orthodoxy.
https://www.statnews.com/2025/04/23/us-biomedical-research-trump-dei-sex-differences-rebuilding
11 months ago
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I'm a proud Harvard Professor, and the University stands behind academic freedom that powers discovery. Grants are not gifts; they are contracts on which we have to deliver. We work long, hard hours, train students, and return innovation and value to the US.
#Harvard
www.cnn.com/2025/04/17/u...
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iPhones and GPS wouldnât exist without research funded by the US government. Whatâs at stake in Trump cuts to university funding | CNN
Imagine a world without the internet, or GPS, MRNA vaccines or the touchscreen on your iPhone. The science and technology that have become integral to our daily lives may never have existed, experts s...
https://www.cnn.com/2025/04/17/us/universities-funding-trump-cuts/index.html
11 months ago
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Our history of investment in funding biomedical research has positioned the US as the world leader, improved human health, trained generations of highly talented individuals who have founded biotech and lead pharmaceutical companies that employ tens of thousands.
news.harvard.edu/gazette/stor...
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NIH funding delivers exponential economic returns â Harvard Gazette
Report finds all 50 states reap gains in patient health, job creation, research resources, business development.
https://news.harvard.edu/gazette/story/2025/03/nih-funding-delivers-exponential-economic-returns/?spMailingID=35860602&spUserID=Mjg0NTUxNzIwOTkS1&spJobID=2863433157&spReportId=Mjg2MzQzMzE1NwS2
12 months ago
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I was interviewed by a local news channel about the disruptions in NIH funding. While the news story concentrates on the proposed reduction in facilities and administration costs, what they left out of the story is the significant risks of wider funding slowdown.
www.boston25news.com/news/local/t...
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âThis is life or deathâ: Mass. scientists fear consequences of funding cuts by federal government
New changes in how the federal government plans to fund research are sending a chill through many local laboratories.
https://www.boston25news.com/news/local/this-is-life-or-death-mass-scientists-fear-consequences-funding-cuts-by-federal-government/STTEHNBL6JCKRCLDY65ITUKUCY/
about 1 year ago
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you reached the end!!
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