Ben Parker Lab
@benparkerlab.bsky.social
📤 146
📥 168
📝 22
Scientist @UniMelb 🇦🇺 focusing on
#proteomics
, signaling and metabolism. Loves 🏄♂️⛷️⛰️
reposted by
Ben Parker Lab
Komander Lab
4 months ago
Two weeks to go before the abstract deadline (July 18th)! Looking forward to seeing you all there!
add a skeleton here at some point
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Are you interested in
#proteomics
and
#skeletalmuscle
? It can be a real pain to get deep reproducible coverage. Check out our review with
@adeshmukh.bsky.social
We analyse some considerations including current limitations and how to potentially overcome them
#myoblue
@unimelbcmr.bsky.social
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Skeletal muscle proteomics: considerations and opportunities
npj Metabolic Health and Disease - Skeletal muscle proteomics: considerations and opportunities
https://www.nature.com/articles/s44324-025-00073-2.epdf?sharing_token=5ciOO42x5U5J2V7AB9Na3NRgN0jAjWel9jnR3ZoTv0OfJvwARODtUIbSKR-bfvhGuUH9ifK5YU2-o98yYNaPXYp6KnVa89czPPTjlnqnuj0mE4yBceUcO-AACBWwBXJMcDWN3ByAS4NZ8f74q9M_klRhghih5oaN7p6sbRqGZRA%3D
4 months ago
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reposted by
Ben Parker Lab
Kim-Anh Lê Cao
5 months ago
👩💻 We’re hiring! Lê Cao Lab at Uni Melbourne
@mig-unimelb.bsky.social
needs an R dev to power the next-gen of mixOmics 🚀 Love
#RStats
,
#Bioconductor
& multi-omics? Help expand mixOmics, run workshops & publish cutting-edge methods. Apply:
unimelb.wd105.myworkdayjobs.com/en-US/UoM_Ex...
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reposted by
Ben Parker Lab
Yasset Perez-Riverol
5 months ago
🚨 Has PRIDE helped your research? Take 15 mins to tell funders why open data matters! 📊 Fill out the EMBL-EBI 2025 survey 👉
www.surveymonkey.com/r/QGFMBH8?ch...
Your feedback helps keep PRIDE open, FAIR & impactful. 🙏 Please share!
#FAIR
#OpenData
#Proteomics
#MassSpectrometry
#PRIDE
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LinkedIn
This link will take you to a page that’s not on LinkedIn
https://lnkd.in/gNfHEtYe
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Check out our new
#proteomic
method to site-specifically quantify UFMylation! We applied the approach to look at human skeletal muscle biopsies from
#ALS
. A great collaboration with CellSignalTechnology and many others... A little summary below...
www.cell.com/cell-reports...
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Site-specific quantification of the in vivo UFMylome reveals myosin modification in ALS
UFMylation is the post-translational modification of Ubiquitin Fold Modifier1 (UFM1) applied to substrate proteins. Blazev et al. develop an antibody-based enrichment approach followed by LC-MS/MS to ...
https://www.cell.com/cell-reports-methods/fulltext/S2667-2375(25)00084-0
6 months ago
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reposted by
Ben Parker Lab
Alexey Nesvizhskii
6 months ago
Exciting news: We have released
#FragPipe
23, and it's one of our biggest updates ever. Windows installer, support for TMT on Astral and timsTOF, TMT35, PTM site reports for DIA, improved Astral data handling in
#MSFragger
, improved diaTracer for diaPASEF data, better Skyline integration, and more!
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reposted by
Ben Parker Lab
The Castiglione Lab @ Vanderbilt
8 months ago
Our newest paper is out in Science! This riddle took 5 years to solve. Genome annotation and AI missed it. Manual inspection and serendipity still have advantages for cracking nature's secrets! With
@science.org
@evolutionvu.bsky.social
@rokaslab.bsky.social
www.science.org/doi/10.1126/...
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Running a genetic stop sign accelerates oxygen metabolism and energy production in horses
Horses are among nature’s greatest athletes, yet the ancestral molecular adaptations fueling their energy demands are poorly understood. Within a clinically important pathway regulating redox and meta...
https://www.science.org/doi/10.1126/science.adr8589
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Hi
#proteomics
people, I'm hoping someone can help interpret these results. We have generated .fasta from RNAseq. We are testing the effects of different db size on min score cut-off @ 1% FDR. Hypothesis: as db increase, score increases. We don't see this with multiple algorithms and appears random.
8 months ago
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reposted by
Ben Parker Lab
Julien Ochala
8 months ago
www.thelancet.com/journals/lan...
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Managing insulin resistance: the forgotten pathophysiological component of type 2 diabetes
Glucagon-like peptide-1 (GLP-1) receptor agonists have gained widespread use in the treatment of individuals with type 2 diabetes because of their potent weight loss promoting effect, ability to augme...
https://www.thelancet.com/journals/landia/article/PIIS2213-8587(24)00127-X/abstract
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Amazing location and science!!!!
add a skeleton here at some point
8 months ago
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reposted by
Ben Parker Lab
Australian & New Zealand Society for Mass Spectrometry
8 months ago
⏰ A reminder that poster abstract submissions close this Friday 14th March. Don't miss this last chance to present your research at AUS-oMicS!
www.ausomics.com/abstracts
#TeamMassSpec
#massspectrometry
#massspec
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