the BridgeDb Tiwid project ("this is where identifiers die") collects outdated identifiers, and when known, provides information when the identifiers was retired (stopped working) and if there is a replacement identifier. In the past week two new features got added. ORCIDs can now be provided […]

new paper: "A collaborative network analysis for the interpretation of transcriptomics data in Huntington’s disease" https://doi.org/10.1038/s41598-025-85580-4 "our study shows that collaborative network analysis approaches are well-suited to study rare […] [Original post on social.edu.nl]

new conference proceedings: "BioDataFuse: Enhancing data interoperability through modular queries and knowledge graph construction" https://ceur-ws.org/Vol-3890/ https://ceur-ws.org/Vol-3890/paper-23.pdf #rdf #sparql #bioinformatics #python

a new BridgeDb metabolite ID mapping database has been released, compatible with PathVisio 3.3: https://doi.org/10.6084/m9.figshare.28030427.v1 To support #sr24 #metakids pathway curation, see https://social.edu.nl/@egonw/113599062833652441

On Tuesday, December 3rd, 2024, our Department of Translational Genomics hosted its very first TGX Conference Day! The event showcased the incredible research being conducted within our five key research lines: 🔬 Clinical Genomics 🥗 Nutrigenomics 🧪 In Vitro Assays ☣️ Toxicogenomics 💻 […]

the Serious Request fundraiser is nearing. The DJs lock themselves up in just under two weeks and on the 16th I start a week long working on metabolic disease related pathways, joined by already three others: https://sr24.wikipathways.org/ But the preparation […] [Original post on social.edu.nl]

two publisher-version papers have become green Open Access via the Taverne clause: - "A template wizard for the cocreation of machine-readable data-reporting to harmonize the evaluation of (nano)materials" https://doi.org/10.1038/s41596-024-00993-1 -> free PDF at […]

#introduction This account is for the bioinformatics team at FHML, Maastricht University. You can find some of them on Mastodon: - Susan Coort: @susancoort - Marvin Martens: @Marvin But also some of the projects we have been involved in: - BridgeDb: @bridgedb - WikiPathways: @wikipathways - […]

we have just enabled the Bridgy Fed bridge to Bluesky: https://bsky.app/profile/bigcat-UM.social.edu.nl.ap.brid.gy