Riccardo Vicedomini
@rvicedomini.bsky.social
📤 19
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CNRS researcher at
@irisa-lab.bsky
.social /
@genscaleteam.bsky.social
reposted by
Riccardo Vicedomini
Josipa Lipovac
7 months ago
I am happy to share our new preprint introducing MADRe - a pipeline for Metagenomic Assembly-Driven Database Reduction, enabling accurate and computationally efficient strain-level metagenomic classification. 🔗https://www.biorxiv.org/content/10.1101/2025.05.12.653324v1 1/9
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Riccardo Vicedomini
Rayan Chikhi
11 months ago
We have updated all Logan contigs (now at version 1.1)! Contiguity has been much improved (2x) and a duplicated k-mers bug has been fixed. More information and changelog here:
github.com/IndexThePlan...
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https://github.com/IndexThePlanet/Logan/blob/main/Stats-v1.1.md
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Riccardo Vicedomini
Camila Duitama
11 months ago
🧬 Excited to share our latest work, MUSET 🌭, a new tool for creating abundance unitig matrices from sequencing data. It was published yesterday in Oxford Bioinformatics if you want to have a look👀 :
academic.oup.com/bioinformati...
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MUSET: Set of utilities for constructing abundance unitig matrices from sequencing data
AbstractSummary. MUSET is a novel set of utilities designed to efficiently construct abundance unitig matrices from sequencing data. Unitig matrices extend
https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btaf054/7997265?rss=1
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