Cécile Tran Kiem
@ceciletk.bsky.social
📤 587
📥 157
📝 8
Postdoc at Fred Hutchinson Cancer Center on mathematical modelling of infectious diseases, she/her.
Excited to share our work w/
@justinlessler.bsky.social
, Trevor Bedford & Amanda Perofsky:
doi.org/10.1098/rspb...
. We investigate when sequence datasets are informative about between-group transmission, and how this depends on the relative pace of mutation, between-group transmission and sampling.
2 months ago
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Pathogen genomes can provide insights into underlying disease transmission patterns but new methods are needed to analyze large genome datasets. Our work using identical pathogen sequences to characterize fine scale SARS-CoV-2 transmission was just published in
@nature.com
tinyurl.com/bdzk9xjj
🥳
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Fine-scale patterns of SARS-CoV-2 spread from identical pathogen sequences - Nature
The analysis of pairs of identical SARS-CoV-2 genome sequences enables characterization of transmission patterns between geographies and age groups.
https://tinyurl.com/bdzk9xjj
about 1 year ago
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reposted by
Cécile Tran Kiem
Simon Cauchemez
over 1 year ago
During COVID years in France, the SocialCov survey showed major evolution and strong heterogeneities in contact patterns according to age, employment, weekend/vacation. Led by
@paolobosetti.bsky.social
and
@lullaopatowski.bsky.social
.
bmcinfectdis.biomedcentral.com/articles/10....
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Evolution of social contacts patterns in France over the SARS-CoV-2 pandemic: results from the SocialCov survey - BMC Infectious Diseases
Background Non-pharmaceutical measures such as lockdowns, curfews and place closures were implemented in France during 2020–2022 to reduce contacts in the population, to limit the spread of SARS-CoV-2...
https://bmcinfectdis.biomedcentral.com/articles/10.1186/s12879-025-10611-4
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