A phylogeny aware analysis of gene function for the biodiversity genomics era https://www.biorxiv.org/content/10.1101/2025.09.19.677313v1

Trait-dependent diversification and spatio-ecological limits drive angiosperm diversity unevenness across the Canary Islands archipelago https://www.biorxiv.org/content/10.1101/2025.09.19.677265v1

Microsynteny Analysis Clarifies the Early Diversification of Cypriniform Fishes https://www.biorxiv.org/content/10.1101/2025.09.19.677351v1

Evolution of sideways locomotion in crabs https://www.biorxiv.org/content/10.1101/2025.09.20.677458v1

Climatic seasonality and topographic complexity shape plant growth form distributions in the Canary Islands https://www.biorxiv.org/content/10.1101/2025.09.19.677327v1

Targeted ortholog search in unannotated genome assemblies with fDOG-Assembly https://www.biorxiv.org/content/10.1101/2025.09.19.677253v1

Revealing Diversity in NRPS Gene Clusters Across Six Pathogenic Colletotrichum Species https://pubmed.ncbi.nlm.nih.gov/40974433/

Coprococcus intestinalis sp. nov., Parabacteroides caecihominis sp. nov., and "Akkermansia massiliensis" B2-R-115 with High Probiotic Potential from the Human Gut Microbiome https://pubmed.ncbi.nlm.nih.gov/40974460/

Full-genome sequence of a novel potyvirus infecting Sauropus androgynus https://pubmed.ncbi.nlm.nih.gov/40974540/

Correction to "MnOxGeneTool: A Comprehensive Tool for Identifying and Quantifying Mn(II)-Oxidizing Genes, Revealing Phylogenetic Diversity and Environmental Drivers of Mn(II)-Oxidizers" https://pubmed.ncbi.nlm.nih.gov/40974026/

Phylogenetic relatedness drives litter-mediated diversity-invasibility relationships https://pubmed.ncbi.nlm.nih.gov/40974215/

RE3DB: A multi-omics phylogenomics platform for rice E3 ubiquitin ligases identifies novel regulators of pollen germination https://www.biorxiv.org/content/10.1101/2025.09.18.676983v1

A PLETHORA transcription factor shapes cucumber shoot architecture https://www.biorxiv.org/content/10.1101/2025.09.18.677013v1

Evolutionary history and recurrent host adaptation in ancient Salmonella enterica https://www.biorxiv.org/content/10.1101/2025.09.18.676881v1

Evolutionary patterns and repeated adaptive strategies of deep-sea anemones https://www.biorxiv.org/content/10.1101/2025.09.17.676462v1

Generative continuous time model reveals epistatic signatures in protein evolution https://www.biorxiv.org/content/10.1101/2025.09.17.676821v1

Occurrence of Tomato Leaf Curl New Delhi Virus in Three Cucurbits Crops in Northern China and Its Fast and Accurate Detection through Heat-Labile Uracil-DNA Glycosylase Based LAMP Elucidated with Lateral Flow Dipstick https://pubmed.ncbi.nlm.nih.gov/40968395/

Emergence of two novel viruses in Tibetan pigs with porcine diarrheal disease on the Tibetan plateau of southwest China https://pubmed.ncbi.nlm.nih.gov/40969343/

Selective shaping of prokaryotic communities and core symbiont maintenance suggest large-scale aquarium facilities as reservoirs of microbiome diversity in octocorals https://pubmed.ncbi.nlm.nih.gov/40969425/

Lysimachia nanshanensis (Primulaceae), a new species from southwest Hunan, China https://pubmed.ncbi.nlm.nih.gov/40969783/

The revision of baphetids from the Middle Pennsylvanian of the Czech Republic: Morphology, ontogeny, palaeoecology, and the reassessment of the phylogeny of Baphetoidea https://pubmed.ncbi.nlm.nih.gov/40970424/

Phylogenomic Identification of a Highly Conserved Copper-Binding RiPP Biosynthetic Gene Cluster in Marine Microbulbifer Bacteria https://pubmed.ncbi.nlm.nih.gov/40970901/

The genetic diversity of tick species in selected areas of Qinghai Province https://pubmed.ncbi.nlm.nih.gov/40970977/

Molecular detection and characterization of Chlamydiaceae from seagulls associated to anthropogenic environments in Argentina https://pubmed.ncbi.nlm.nih.gov/40970983/

Phylogenetic context of antibiotic resistance provides insights into the dynamics of resistance emergence and spread https://pubmed.ncbi.nlm.nih.gov/40971902/

Independent and repeated acquisition of Sodalis endosymbiotic bacteria across the diversification of feather lice https://pubmed.ncbi.nlm.nih.gov/40969690/

Independent and repeated acquisition of Sodalis endosymbiotic bacteria across the diversification of feather lice https://pubmed.ncbi.nlm.nih.gov/40969690/

MyESL: A software for evolutionary sparse learning in molecular phylogenetics and genomics https://pubmed.ncbi.nlm.nih.gov/40971735/

Phylogenetic context of antibiotic resistance provides insights into the dynamics of resistance emergence and spread https://pubmed.ncbi.nlm.nih.gov/40971902/

Phylogenetic context of antibiotic resistance provides insights into the dynamics of resistance emergence and spread https://pubmed.ncbi.nlm.nih.gov/40971902/

Mechanisms of Community Assembly through the lens of Phylogenetic Diversity: a Critical Reappraisal https://pubmed.ncbi.nlm.nih.gov/40972030/

Phylogenomic Identification of a Highly Conserved Copper-Binding RiPP Biosynthetic Gene Cluster in Marine Microbulbifer Bacteria https://pubmed.ncbi.nlm.nih.gov/40970901/

MyESL: A software for evolutionary sparse learning in molecular phylogenetics and genomics https://pubmed.ncbi.nlm.nih.gov/40971735/

A deep-time landscape of plant cis-regulatory sequence evolution https://www.biorxiv.org/content/10.1101/2025.09.17.676453v1

Genome-wide characterization and stress-responsive expression analysis of the cinnamoyl-CoA reductase gene family in soybean https://pubmed.ncbi.nlm.nih.gov/40963837/

A new potential mosquito-borne virus: detection of Human-derived Jingmenvirus in several-species of mosquitoes from Yaoundé, Cameroon https://pubmed.ncbi.nlm.nih.gov/40964036/

Bacillus velezensis NC-B4 as a promising antifungal agent for biocontrol of Candida auris https://pubmed.ncbi.nlm.nih.gov/40964052/

Chromosome-level genome assembly and annotation of Ulmus minor reveal dynamic intrageneric clusters of resistance genes https://pubmed.ncbi.nlm.nih.gov/40965506/

SNMPs Function as Molecular Bridges between OBPs and ORs in the Olfactory Recognition of Clostera Retitura (Walker) (Lepidoptera: Notodontidae) https://pubmed.ncbi.nlm.nih.gov/40965684/

Seasonal dynamics and genetic diversity of human rhinoviruses in patients with acute respiratory infection in Bangkok in 2024 https://pubmed.ncbi.nlm.nih.gov/40965717/

Epidemiological Investigation and Phylogenetic Analysis of Bovine Respiratory Disease Complex in Northern China https://pubmed.ncbi.nlm.nih.gov/40965850/

Detection and Phylogenetic Characterization of Human Aichi Virus in Sewage by Next Generation Sequencing in Eastern China, 2019-2022 https://pubmed.ncbi.nlm.nih.gov/40966034/

Molecular epidemiology and phylogenetics of camel anaplasmosis https://pubmed.ncbi.nlm.nih.gov/40966197/

Arthropod Pax gene evolution: a role for Vanessa cardui twin of eyeless in eye development https://pubmed.ncbi.nlm.nih.gov/40966593/

Phylogenetic evidence for nationwide expansion Brucella melitensis lineages drives the re-emerging and epidemic of human brucellosis in Jiangsu, China https://pubmed.ncbi.nlm.nih.gov/40964059/

Description of Neorhizobium tunisiense sp. nov., reclassification of Neorhizobium xiangyangii as Pseudorhizobium xiangyangii comb. nov. and proposal of Terrirhizobium terrae gen. nov., comb. nov. to accommodate the divergent species Aliirhizobium ter https://pubmed.ncbi.nlm.nih.gov/40965965/

Genome-wide characterization and stress-responsive expression analysis of the cinnamoyl-CoA reductase gene family in soybean https://pubmed.ncbi.nlm.nih.gov/40963837/

Molecular epidemiology and phylogenetics of camel anaplasmosis https://pubmed.ncbi.nlm.nih.gov/40966197/

Phylogenetic evidence for nationwide expansion Brucella melitensis lineages drives the re-emerging and epidemic of human brucellosis in Jiangsu, China https://pubmed.ncbi.nlm.nih.gov/40964059/

Epidemiological Investigation and Phylogenetic Analysis of Bovine Respiratory Disease Complex in Northern China https://pubmed.ncbi.nlm.nih.gov/40965850/