MMonitor for real-time monitoring of microbial communities using long reads

A convenient single-cell assay for the newly synthesized transcriptome reveals FLI1 regulon downregulation during T cell activation

DVOUG enables robust DNA sequence assembly and reconstruction with a dynamic, variable-order graph

A signature-protein-based approach for accurate and efficient profiling of the human gut virome

Spatial ploidy inference using quantitative imaging

FAME-CRISPR improves CRISPR-Cas9 genome editing via HDAC inhibition and engineered virus-like particle delivery

Approaches for identification of 5′ UTR mutations impacting translation and protein production from neurodevelopmental disorder genes

OSCAR is an online ML-powered tool for organoid cell counting using bright-field images

Computational modeling reveals cognitive processes in simple rodent depression tests

One-step approach producing barcoded rabies virus with optimized diversity

Development and application of a barcoded rabies viral tracing method for mapping brain-wide inputs to single neurons

Visual detection of seizures in mice using supervised machine learning

Real-time 4D MRI reconstruction using DVR-NeMF, a framework for dynamic volumetric reconstruction

Vector-guided graph learning for spatial multi-slice multi-omics alignment

Fast and sensitive detection of targeted gene fusions using frequency minimizers and fuzzy pattern matching with Fuzzion2

Temporal reassignment and correspondence evaluation with quality control for time-course imaging of 3D cell culture

Cortical organoid-derived models of the melanoma brain metastatic niche enable prioritization of cancer-targeting drugs

Non-invasive measurement of biomolecular condensate interfacial tension and bending rigidity

Simultaneous capture of single cell RNA-seq, ATAC-seq, and CRISPR perturbation enables multiomic screens to identify gene regulatory relationships

High-speed neural imaging with multiplexed miniaturized two-photon microscopy

Benchmarking of human read removal strategies for viral and microbial metagenomics

EyaHOST, a modular genetic system for investigation of intercellular and tumor-host interactions in Drosophila melanogaster

Imaging the time course of DNA damage response at a nonrepetitive endogenous locus

Combinatorial responsiveness of chemosensory neurons in mouse explants revealed by DynamicNeuroTracker

Targeted long-read methylation analysis using hybridization capture suitable for clinical specimens

DiffHiChIP: Identifying differential chromatin contacts from HiChIP data

A tabletop blast device for the study of the long-term consequences of traumatic brain injury on brain organoids

MetaLigand provides a prior-knowledge-guided framework for predicting non-peptide ligand mediated cell-cell communication

SICyLIA-cTMT dissects redox proteome dynamics with high accuracy and depth at microgram scale

A transmission electron microscopy platform for assessing mitochondrial and nuclear architecture in cardiomyocytes

Single-cell multiomics data integration and generation with scPairing

Real-time pH imaging of macrophage lysosomes using the pH-sensitive probe ApHID

An optimized click chemistry method allows visualization of proliferating neuronal progenitors in the mouse brain

OLIVE provides rapid visualization and analysis of chromatin tracing experiments

APEX2 proximity labeling of RNA in bacteria

AIstain: Enhancing microglial phagocytosis analysis through deep learning

stTransfer enables transfer of single-cell annotations to spatial transcriptomics with single-cell resolution

Using spatial proteomics to enhance cell type assignments in histology images

Real-time pH imaging of macrophage lysosomes using the pH-sensitive probe ApHID

SpIC3D imaging for spinal in situ contrast 3D visualization

Genome-wide profiling of unmodified DNA using methyltransferase-directed tagging and enrichment

Reference-guided assembly of metagenomes with MetaCompass

Metabolic profiling of antigen-specific CD8+ T cells by spectral flow cytometry

In silico methods for drug-target interaction prediction

A statistical physics approach to integrating multi-omics data for disease-module detection

The Brownian dynamics simulator PyRID for reacting and interacting particles written in Python

A real-time all-optical interface for dynamic perturbation of neural activity during behavior

A deep learning pipeline for accurate and automated restoration, segmentation, and quantification of dendritic spines

Computational tracking of cell origins using CellSexID from single-cell transcriptomes

Comprehensive noise reduction in single-cell data with the RECODE platform