Cell Biology J-Club
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Wishing all our community a healthy, productive and creative new year full of exciting and novel cell biology!!
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Spatial inhibition of RhoA by RhoGAP15B promotes protrusive activity during collective cell migration
www.biorxiv.org/content/10.6...
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Spatial inhibition of RhoA by RhoGAP15B promotes protrusive activity during collective cell migration
The Rho family GTPases RhoA, Rac1 and Cdc42 are well established regulators of collective migration by driving the formation of cellular protrusions and by regulating actomyosin contraction and adhesi...
https://www.biorxiv.org/content/10.64898/2025.12.30.694567v1
1 day ago
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Cell type–specific spatiotemporal control of GFP-tagged protein degradation in mice url:
rupress.org/jcb/article-...
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Cell type–specific spatiotemporal control of GFP-tagged protein degradation in mice
Prado-Mantilla et al. develop a mouse line to allow cell type–specific, rapid, and reversible degradation of GFP-tagged proteins. Using this line, they dem
https://rupress.org/jcb/article-abstract/225/4/e202504003/278765/Cell-type-specific-spatiotemporal-control-of-GFP
3 days ago
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www.biorxiv.org/content/10.6...
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The conserved NUS-1/DHDDS complex links N-glycosylation to lipid and lysosomal homeostasis in C. elegans
N-glycosylation, driven by the cis-prenyltransferase (cis-PT) complex, a NUS1 and DHDDS heterotetramer, is vital for proteome integrity. Despite being linked to severe congenital disorders of glycosyl...
https://www.biorxiv.org/content/10.64898/2025.12.25.696488v1
3 days ago
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www.nature.com/articles/s41...
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Cryo-EM structures of the tubulin cofactors reveal the molecular basis of alpha/beta-tubulin biogenesis - Nature Communications
Microtubules depend on correctly assembled αβ-tubulin subunits for cellular structure and transport. Here, authors reveal how tubulin cofactors form a cage-like, GTP-dependent complex that catalyzes α...
https://www.nature.com/articles/s41467-025-68142-0
3 days ago
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rupress.org/jcb/article/...
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Ist2 is a phospholipid scramblase that links lipid transport at the ER to organelle homeostasis
Sebinelli, Syska, Razmazma et al. show that the yeast protein Ist2, which localizes to ER–plasma membrane contact sites, possesses phospholipid scramblase
https://rupress.org/jcb/article/225/2/e202502112/278759/Ist2-is-a-phospholipid-scramblase-that-links-lipid
5 days ago
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In vivo mapping of peroxisome dynamics and pexophagy using PO-TRG and CA-PO-TRG reporter mice
Xiong et al. present new mouse models for visualizing the selective degradation of peroxisomes (pexophagy) in living animals. The PO-TRG model reveals dist
https://rupress.org/jcb/article/225/2/e202503169/278756/In-vivo-mapping-of-peroxisome-dynamics-and
5 days ago
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Surface Morphometrics reveals local membrane thickness variation in organellar subcompartments | Journal of Cell Biology | Rockefeller University Press
Medina, Chang et al. introduce a new method based on the Surface Morphometrics pipeline to measure global and local thicknesses of organellar membranes fro
https://rupress.org/jcb/article/225/3/e202505059/278755/Surface-Morphometrics-reveals-local-membrane
5 days ago
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www.biorxiv.org/content/10.6...
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Structural and mechanistic basis for membrane recognition and activation of the vacuolar lipase Atg15
Atg15 is a vacuolar phospholipase B essential for the degradation of intravacuolar vesicles such as autophagic bodies. Despite its central role in cellular membrane turnover, the molecular basis of ho...
https://www.biorxiv.org/content/10.64898/2025.12.23.696130v1
6 days ago
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NPC1 trafficking via VPS41-dependent LAMP carriers regulates endosomal cholesterol homeostasis | PNAS
www.pnas.org/doi/10.1073/...
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PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
https://www.pnas.org/doi/10.1073/pnas.2521979122
6 days ago
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Compromised ESCRT signalling is sufficient for resistance to the Target of Rapamycin Complex inhibitor Torin1 in fission yeast
Background: Fission yeast cells defective in Golgi-endosomal sorting display high resistance to Torin1, a pan-Target of Rapamycin (TOR) inhibitor. TOR complexes regulate the ESCRT system to integrate ...
https://www.biorxiv.org/content/10.64898/2025.12.23.696270v1
7 days ago
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www.nature.com/articles/s41...
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mGluR4–NPDC1 complex mediates α-synuclein fibril-induced neurodegeneration - Nature Communications
How α-synuclein interacts with the neuronal cell surface to contribute to disease pathology is not fully understood. Here, the authors conducted a comprehensive search for neuronal membrane proteins m...
https://www.nature.com/articles/s41467-025-67731-3
8 days ago
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www.biorxiv.org/content/10.6...
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Optogenetic Proximity Labeling Maps Spatially Resolved Mitochondrial Surface Proteomes and a Locally Regulated Ribosome Pool
Outer mitochondrial membranes (OMM) function as dynamic hubs for inter-organelle communication, integrating bidirectional signals, and coordinating organelle behavior in a context-dependent manner. Ho...
https://www.biorxiv.org/content/10.64898/2025.12.21.693523v1
9 days ago
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www.biorxiv.org/content/10.1...
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TMEM55B controls lipolysis via lysosomal pH and ER lysosome calcium signaling
Endolysosomal maturation is accompanied by luminal acidification and increased calcium concentration. Mature lysosomes function as major intracellular calcium storage organelles, alongside the endopla...
https://www.biorxiv.org/content/10.1101/2025.10.21.683636v2
9 days ago
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Membrane contacts between caveolae and the endoplasmic reticulum regulate uptake and metabolic trapping of long-chain fatty acids
The vital process of cellular fatty acid metabolism involves uptake, metabolic trapping and storage of long-chain fatty acids (LCFAs) in different lipid species. Although several different enzymes lik...
https://www.biorxiv.org/content/10.64898/2025.12.22.695939v1
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Universal length fluctuations of actin structures found in cells
Actin is a key cytoskeletal protein that forms filaments that bundle into linear structures in vivo, which are involved in motility, signaling, and cell division. Despite the rapid turnover of individual actin monomers, these structures are often maintained at a specific length, which is important for their function. Length control is commonly attributed to length-dependent assembly or disassembly of the structure, whereby a stable length is achieved when the two opposing processes are balanced. Here we show that regardless of the nature of the length-dependent feedback, such balance point models predict a Gaussian distribution of lengths with a variance that is proportional to the steady state length. Contrary to this prediction, a reexamination of experimental measurements on the lengths of stereocilia, microvilli, actin cables, and filopodia reveals that the variance scales with the square of the steady state length. We propose a model in which the individual filaments in bundles undergo independent assembly dynamics, and the length of the bundle is set by the length of the longest filament. This model predicts a non-Gaussian distribution of bundle lengths with a variance that scales with the square of the steady state length. Our theory underscores the importance of crosslinking filaments into networks for size control of cytoskeleton structures. ### Competing Interest Statement The authors have declared no competing interest.
https://www.biorxiv.org/content/10.1101/2023.07.27.550898v2
10 days ago
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www.biorxiv.org/content/10.6...
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eIF2Bα subcellular localisation – a potential link between translation initiation and stress granule formation?
The eukaryotic initiation factor 2B (eIF2B) complex is a guanine nucleotide exchange factor (GEF) that regulates translation initiation and is central to the integrated stress response (ISR). eIF2B ex...
https://www.biorxiv.org/content/10.64898/2025.12.19.695478v1
10 days ago
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www.nature.com/articles/s41...
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Interphase chromosome conformation is specified by distinct folding programmes inherited through mitotic chromosomes or the cytoplasm - Nature Cell Biology
Schooley et al. find that mitotically bookmarked loci drive a transient chromosome folding state during G1 entry that is subsequently modulated by factors inherited through the cytoplasm.
https://www.nature.com/articles/s41556-025-01828-1
10 days ago
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Mechanoresilience of lysosomes conferred by TMEM63A
www.biorxiv.org/content/10.6...
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Mechanoresilience of lysosomes conferred by TMEM63A
Lysosomes are subject to perturbations that can cause damage to their limiting membrane. Osmotic shifts, pore-forming toxins, and the growth of luminal polymers or pathogens all stand to increase lyso...
https://www.biorxiv.org/content/10.64898/2025.12.18.695245v1
13 days ago
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Nuclear speckle proteins form intrinsic and MALAT1-dependent microphases: Cell
www.cell.com/cell/fulltex...
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Nuclear speckle proteins form intrinsic and MALAT1-dependent microphases
In nuclear speckles, sequence-encoded inter-domain attractive and repulsive interactions drive proteins to form hierarchical structures, including size-limited microphases, clusters of microphases, mi...
https://www.cell.com/cell/fulltext/S0092-8674%2825%2901361-3
13 days ago
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The G3BP stress-granule proteins reinforce the integrated stress response translation programme
www.nature.com/articles/s41...
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The G3BP stress-granule proteins reinforce the integrated stress response translation programme - Nature Cell Biology
Smith and Bartel show that mRNA recruitment to stress granules imparts resistance to the integrated stress response translational shutdown.
https://www.nature.com/articles/s41556-025-01834-3
13 days ago
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SPLiCR-seq: A CRISPR-Based Screening Platform for RNA splicing Identifies Novel Regulators of IRE1α-XBP1 Signaling Under ER Stress
www.nature.com/articles/s41...
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SPLiCR-seq: A CRISPR-Based Screening Platform for RNA splicing Identifies Novel Regulators of IRE1α-XBP1 Signaling Under ER Stress - Nature Communications
Systematic investigation of RNA splicing regulation remains challenging. Here, authors present SPLiCR-seq, a CRISPR platform enabling direct measurement of splicing outcomes for pooled perturbations. ...
https://www.nature.com/articles/s41467-025-67633-4
13 days ago
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Lipid Transfer Proteins and PI4KIIα Initiate Nuclear p53-Phosphoinositide Signaling
www.biorxiv.org/content/10.1...
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Lipid Transfer Proteins and PI4KIIα Initiate Nuclear p53-Phosphoinositide Signaling
Phosphoinositide (PIPn) messengers are present in non-membranous regions of nuclei where they are assembled into a phosphatidylinositol (PI) 3-kinase (PI3K)/Akt pathway that is distinct from the cytos...
https://www.biorxiv.org/content/10.1101/2023.05.08.539894v5
14 days ago
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ER-to-Golgi transport machinery promotes the excessive cargo-triggered unfolded protein response
www.biorxiv.org/content/10.6...
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ER-to-Golgi transport machinery promotes the excessive cargo-triggered unfolded protein response
Disruptions to ER homeostasis trigger the unfolded protein response (UPR) to restore proteostatic balance. While defects in the secretory machinery are known to induce ER stress, it remains unclear wh...
https://www.biorxiv.org/content/10.64898/2025.12.15.694336v1
14 days ago
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Stress granule dynamics govern TOR reactivation and growth recovery during post-heat stress adaptation | Science Advances
www.science.org/doi/10.1126/...
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Stress granule dynamics govern TOR reactivation and growth recovery during post-heat stress adaptation
The disassembly rate of SGs sets the pace for plant growth recovery after heat stress by controlling TOR kinase reactivation.
https://www.science.org/doi/10.1126/sciadv.adv6202
14 days ago
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GPNMB is a biomarker for lysosomal dysfunction and is secreted via LRRK2-modulated lysosomal exocytosis | Science Advances
www.science.org/doi/10.1126/...
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GPNMB is a biomarker for lysosomal dysfunction and is secreted via LRRK2-modulated lysosomal exocytosis
The secretion mechanism of the Parkinson’s disease risk factor GPNMB highlights lysosomal dysfunction as a disease mechanism.
https://www.science.org/doi/10.1126/sciadv.adv1434
14 days ago
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In @elife: CROP2, a Retriever-PROPPIN Complex Mediating Protein Export from Endosomes to the Plasma Membrane
doi.org/10.7554/eLif...
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CROP2, a Retriever-PROPPIN Complex Mediating Protein Export from Endosomes to the Plasma Membrane
https://doi.org/10.7554/eLife.109403.1
14 days ago
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Torsins Organize CLCC1 Assembly to Safeguard ER Bilayer and Lipid Homeostasis
www.biorxiv.org/content/10.6...
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Torsins Organize CLCC1 Assembly to Safeguard ER Bilayer and Lipid Homeostasis
The TMEM41B scramblase and its regulatory partner CLCC1 initiate lipid flux by equilibrating newly-synthesized phospholipids across the endoplasmic reticulum (ER) bilayer, a fundamental process requir...
https://www.biorxiv.org/content/10.64898/2025.12.14.694184v1
15 days ago
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Glycolipid transfer protein modulates vesicular trafficking from the endoplasmic reticulum in HeLa cells
www.biorxiv.org/content/10.1...
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Glycolipid transfer protein modulates vesicular trafficking from the endoplasmic reticulum in HeLa cells
The glycolipid transfer protein (GLTP) has been proposed to function as a sensor and regulator of glycosphingolipid homeostasis in the cell, as levels of GLTP directly influence the quantities of many...
https://www.biorxiv.org/content/10.1101/2025.06.17.657375v2
16 days ago
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Maspardin/SPG21 controls lysosome motility and TFEB phosphorylation through RAB7 positioning url:
rupress.org/jcb/article/...
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Maspardin/SPG21 controls lysosome motility and TFEB phosphorylation through RAB7 positioning | Journal of Cell Biology | Rockefeller University Press
Jacqmin et al. report that the loss of maspardin, which is deficient in spastic paraplegia 21, results in RAB7 hyperactivation due to mislocalization. This
https://rupress.org/jcb/article/225/2/e202501135/278579/Maspardin-SPG21-controls-lysosome-motility-and
16 days ago
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VPS13B recruits lipid vesicles to promote mitochondrial fission and quality control
www.nature.com/articles/s41...
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VPS13B recruits lipid vesicles to promote mitochondrial fission and quality control - Nature Communications
Mutations in VPS13B cause Cohen syndrome, but its cellular role is not fully understood. Here, the authors show that VPS13B promotes mitochondrial fission and mitophagy by facilitating local enrichmen...
https://www.nature.com/articles/s41467-025-67445-6
16 days ago
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Landscape Expansion Microscopy Reveals Interactions between Membrane and Phase-Separated Organelles
www.biorxiv.org/content/10.6...
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Landscape Expansion Microscopy Reveals Interactions between Membrane and Phase-Separated Organelles
Landscape Expansion Microscopy (land-ExM) is a light microscopy technique that visualizes both lipid and protein ultrastructural context of cells. Achieving this level of detail requires both superres...
https://www.biorxiv.org/content/10.64898/2025.12.10.693600v1
17 days ago
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MISO regulates mitochondrial dynamics and mtDNA homeostasis by establishing membrane subdomains
www.nature.com/articles/s41...
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MISO regulates mitochondrial dynamics and mtDNA homeostasis by establishing membrane subdomains - Nature Cell Biology
Zhang et al. characterize the mitochondrial inner membrane subdomain organizer (MISO) protein, which responds to inner mitochondrial membrane stress by inducing membrane subdomains promoting homeostat...
https://www.nature.com/articles/s41556-025-01829-0
17 days ago
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Unequal mitochondrial segregation promotes asymmetric fates during neurogenesis
www.nature.com/articles/s41...
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Unequal mitochondrial segregation promotes asymmetric fates during neurogenesis - Nature Communications
Bunel et al. show that mitochondria behave as asymmetric fate determinants in vertebrates in vivo. Forcing their unequal segregation during mitosis is sufficient to drive premature neural differentiat...
https://www.nature.com/articles/s41467-025-66932-0
17 days ago
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RHOA regulates mitochondria-ER contact sites through modulation of the VAPB/PTPIP51 tether
www.nature.com/articles/s41...
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RHOA regulates mitochondria-ER contact sites through modulation of the VAPB/PTPIP51 tether - Nature Communications
Yang et al. identify RHOA, a GTP hydrolyzing enzyme, as a key regulator of contact sites between mitochondria and the endoplasmic reticulum. It controls contact sites by modulating a tethering complex...
https://www.nature.com/articles/s41467-025-66138-4
18 days ago
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Combined loss of ATG4B, ATG4C and ATG4D impairs systemic autophagy and triggers accelerated aging in mice
www.biorxiv.org/content/10.1...
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Combined loss of ATG4B, ATG4C and ATG4D impairs systemic autophagy and triggers accelerated aging in mice
Autophagy is an essential catabolic pathway that safeguards cellular and tissue homeostasis, yet the systemic consequences of its impairment in mammals remain poorly defined because complete autophagy...
https://www.biorxiv.org/content/10.1101/2025.01.25.634746v2
19 days ago
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www.nature.com/articles/s41...
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An ER-resident lipid scramblase is crucial for biogenesis and function of apicomplexan parasite secretory organelles - Nature Communications
The authors identify the DedA superfamily protein VMP1 as an ER-resident lipid transporter in human parasites T. gondii and P. falciparum. VMP1 is crucial for the function of secretory organelles, ER ...
https://www.nature.com/articles/s41467-025-66303-9
19 days ago
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www.nature.com/articles/s41...
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Dynamic nanoscale architecture of synaptic vesicle fusion in mouse hippocampal neurons - Nature Communications
Synaptic vesicle fusion is essential for neuronal communication, yet its nanoscale sequence has not been directly confirmed. Here, the authors use timed in situ cryo-electron tomography to visualize t...
https://www.nature.com/articles/s41467-025-67291-6
19 days ago
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Reversible One-way Lipid Transfer at ER-Autophagosome Membrane Contact Sites via Atg2
www.biorxiv.org/content/10.1...
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Reversible One-way Lipid Transfer at ER-Autophagosome Membrane Contact Sites via Atg2
Bridge-like lipid transfer proteins (LTPs) contain a repeating β-groove domain and long hydrophobic grooves that act as bridges at membrane contact sites (MCSs) to efficiently transfer lipids. Atg2 is...
https://www.biorxiv.org/content/10.1101/2025.03.27.645728v2
20 days ago
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AGPAT2 acts at the crossroads of lipid biosynthesis and DRP1-mediated ER morphogenesis
www.nature.com/articles/s41...
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AGPAT2 acts at the crossroads of lipid biosynthesis and DRP1-mediated ER morphogenesis - Nature Communications
The endoplasmic reticulum (ER) is the major site for lipid synthesis, yet the role of lipids in ER morphogenesis remains elusive. Here, Adachi et al. identify the ER-resident enzyme AGPAT2, which bind...
https://www.nature.com/articles/s41467-025-66474-5
20 days ago
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Target cell cortical tension regulates macrophage trogocytosis
www.nature.com/articles/s41...
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Target cell cortical tension regulates macrophage trogocytosis - Nature Cell Biology
Cornell et al. show that target cells with low cortical tension induce macrophages to preferentially trogocytose, or engulf in small fragments, whereas target cells with high cortical tension tend tow...
https://www.nature.com/articles/s41556-025-01807-6
20 days ago
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Spatial and morphological organization of mitochondria in neurons across a connectome | Science
www.science.org/doi/10.1126/...
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Spatial and morphological organization of mitochondria in neurons across a connectome
Neuronal function depends on mitochondria, but little is known about their organization across neurons. Using an electron microscopy Drosophila connectome, we uncovered quantitative rules governing th...
https://www.science.org/doi/10.1126/science.ads6674
21 days ago
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Mechanosensitive genomic enhancers potentiate the cellular response to matrix stiffness | Science
www.science.org/doi/10.1126/...
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Mechanosensitive genomic enhancers potentiate the cellular response to matrix stiffness
Epigenetic control of gene expression and cellular phenotype is influenced by changes in the local microenvironment, yet how mechanical cues precisely influence epigenetic state to regulate transcript...
https://www.science.org/doi/10.1126/science.adl1988
21 days ago
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Septins mediate cell-cycle-dependent exclusion of Cdc42 GAP Rga4 from growth sites in fission yeast
www.biorxiv.org/content/10.1...
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Septins mediate cell-cycle-dependent exclusion of Cdc42 GAP Rga4 from growth sites in fission yeast
The polarized growth promoter Cdc42 is inactivated at the growing cell ends during mitosis and reactivated after division. In fission yeast, the Cdc42 inactivator/GAP Rga4 localizes to the cell ends d...
https://www.biorxiv.org/content/10.1101/2024.12.20.629769v2
21 days ago
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Mammalian RAVE couples V-ATPase assembly to organelle acidification and function
www.biorxiv.org/content/10.6...
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Mammalian RAVE couples V-ATPase assembly to organelle acidification and function
Acidification of lysosomes, endosomes, and the Golgi underpins organelle-specific functions within the endomembrane system. This process is driven by vacuolar-type H+-ATPases (V-ATPases), which revers...
https://www.biorxiv.org/content/10.64898/2025.12.10.693398v1
21 days ago
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Multi-faceted roles of β-arrestins in G protein-coupled receptor endocytosis
www.nature.com/articles/s41...
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Multi-faceted roles of β-arrestins in G protein-coupled receptor endocytosis - Nature Communications
The internalization of GPCRs is a key process that regulates their intracellular signaling. Here, the authors reveal the importance of β-arrestins in the internalization of 60 GPCRs and identify the β...
https://www.nature.com/articles/s41467-025-67156-y
21 days ago
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A direct role for a mitochondrial targeting sequence in signalling stress
www.nature.com/articles/s41...
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A direct role for a mitochondrial targeting sequence in signalling stress - Nature
Cells can sense mitochondrial damage through signalling via an unimported mitochondrial targeting sequence.
https://www.nature.com/articles/s41586-025-09834-x
22 days ago
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De novo E-cadherin/catenin complex formation controls basal epithelial mechanics and force transmission for apoptotic cell clearance
www.biorxiv.org/content/10.6...
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De novo E-cadherin/catenin complex formation controls basal epithelial mechanics and force transmission for apoptotic cell clearance
Beyond serving as cohesive barriers, epithelial tissues are involved in tissue surveillance and actively clear apoptotic cells to regulate development, tissue homeostasis and inflammation across speci...
https://www.biorxiv.org/content/10.64898/2025.12.08.692667v1
22 days ago
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Ubiquitination by HRD1 is essential for TLR3 trafficking and its innate immune signaling
www.nature.com/articles/s41...
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Ubiquitination by HRD1 is essential for TLR3 trafficking and its innate immune signaling - Nature Communications
E3 ubiquitin ligase HRD1, a core component of the ER-associated degradation (ERAD) pathway, is essential for the TLR3-mediated innate immune response. HRD1 catalyzes polyubiquitination of TLR3 at lysi...
https://www.nature.com/articles/s41467-025-67219-0
22 days ago
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TMEDs mediate versatile cargo transport in vesicle-dependent unconventional secretion url:
rupress.org/jcb/article-...
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TMEDs mediate versatile cargo transport in vesicle-dependent unconventional secretion
Zheng and colleagues uncover that p24/TMED family proteins mediate selective cargo translocation and release in vesicle-dependent UcPS. The switch of TMED
https://rupress.org/jcb/article-abstract/225/1/e202503075/278561/TMEDs-mediate-versatile-cargo-transport-in-vesicle
23 days ago
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